Salt012484.1
Basic Information
- Insect
- Siphlonurus alternatus
- Gene Symbol
- lov
- Assembly
- GCA_949825025.1
- Location
- OX463781.1:20630646-20635989[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.18 5.6e+02 1.0 0.0 10 23 90 107 89 107 0.78 2 3 2.3 7.2e+03 -2.6 0.3 8 23 114 137 110 138 0.62 3 3 1.4e-18 4.4e-15 55.7 0.0 1 44 473 516 473 517 0.96
Sequence Information
- Coding Sequence
- ATGGCAGGGACGGCGATGGACGCCGGGGGCGCGGGGGCGGGCTACAGTCTCCGCTGGAACAACCACCAGCATCACATCCTGAACGCGTTTGACGCGCTTCTGCAGGACGAGGCGCTAGTTGACGTGACGCTCGTTTGCGAGGAGGGCCGAGTCAGGGCGCACAAGGTGGTGCTCTCTGCGTGCAGTCCGTACTTCCAGCGCATCTTCTCGGAGACGCCGTGCAAGCACCCGGTGATCGTACTGAAGGACCTTCGCGGCTGGGAGGTGCAGGCCATCGTAGACTTCATGTACAAGGGCGAGATCAGTGTGAGCCAGGCGCAACTGCCCTCGCTCATCCGCGCTGCAGAGTCACTGCAGGTACGCGGACTGGCTCACATGGAGAAGGAGCAGATGAGCTCTTCGTCTGCGGCCACCATGTCCCACCGCCGCGGGGTGCGTCTGGAGCCCCCAGGGTCTCCACCGGTCGTGTCCTCGGCCCCTCTCTCCTCCACAAGACCGTACTCGCCAGCACCCAGCCTGGAGAAGCTCGGACTGTACCCAGGGTCGGGGTCGAGAGGAACAGAAAACGGACCCCTCTTGATGTCCTCTCCCTTCTCGCCGTCCCCCGCGCCGCATTTCGAGCCCTCCCCAATCAAACAATCACATCATCTCAATCGTAACGATAACACAAGTCCTCCCATACACTGCAGGGATCCACATCGGTCGTCTCCGCTGCCGAGGAGAAAACAGGCTCGACCCCGACGCAGGTCTGGCGAGCTGAGTGCTCACGACTTGTCCAAGAGCTCAGCCACTTCGTCCCCCGCCTCCTCCCCCTCGGACATTCCCGAGAACCTGTGTGTCAAGAAGCAGCACCTCCAGCCGGGCTCTCCGCCTCTGCATGGTCACCCCTCTACACCCCACTCGCCGCGTTCACTGTCTTCTGTAGCACCTCCTCCGCCTTCCTTTTCTCCCCATCCTCCTTCCCAGCCTTCTTCTGCCCCTTCCCTGCCTCACTCTCCCAACACTGCTGAGCCCCCTGAGAGTCCCCTGACCCCCTCGAGCAATGACATGCCCCACAAAGCCCCCTCATCCTTACCTGCAGACCTGACACCTGGTGAGCGACTTCTGGACTTCTCGATGAATGGTTCTCCGGCTTCACACCCTCCCTCGCTTGGACTGACACACCCTGGCAGTGCTCCACCTCACTTCTCATGGGATCCTCCGCTCGACAGCTCTGGGTTTCCCATGCTGCCCTCGGTCTCCGCACTCTCTCTGACACCTCCGCACGGACTGTTTCCATCCATGGATGGCTGTCGGAACCCTTTGCTGAATGATCTACCGGAATCTAGGCATGACAACCATATTTTGAGCAAAAGAAAATTGGGACGTCCAAAAGGTCAGCACAGCGCTCCACGTGGCGGTCCTCCCAGATCGTGGACCAATGCAGAGCTGACGGAGGCATTACAACACGTTTGGAACAAGAAGATGACAACATCACAGGCATCTCGGATATTTGGCATCCCTTACAACAGCCTCCTGATGTATGTCCGAGGCAAGTACGGCAAATCTCTCAAGTTGGAGCAGCTGAAGAAAGATTGCCTAGTGGGGGCGGAGATGCTTTCTGCCCCCAGTCCTGGCTCCGGAGCACACCACACTTCAGGAGGAGGGAGGGGTGGAGGAGGAGGAGACAAGAACTCAGATGAACTCAGCATCTCAAGTACAGGACCTGAACCTGAATTAGGATTTAACCCATATGCAAGTTTTTACTCTGATTTTGCATTTCCCATACCAGTTAGTATGATTCACTTATTACctcaatcagaaaaaaatcgtGAGTTTCCTGCTTTAGACGATGGAAGAGATAGGGATGATGGAGATGAGTCTGCTAATGAAGAGGACAGGAAGCCCACTCATAATGGACAAAAGTAG
- Protein Sequence
- MAGTAMDAGGAGAGYSLRWNNHQHHILNAFDALLQDEALVDVTLVCEEGRVRAHKVVLSACSPYFQRIFSETPCKHPVIVLKDLRGWEVQAIVDFMYKGEISVSQAQLPSLIRAAESLQVRGLAHMEKEQMSSSSAATMSHRRGVRLEPPGSPPVVSSAPLSSTRPYSPAPSLEKLGLYPGSGSRGTENGPLLMSSPFSPSPAPHFEPSPIKQSHHLNRNDNTSPPIHCRDPHRSSPLPRRKQARPRRRSGELSAHDLSKSSATSSPASSPSDIPENLCVKKQHLQPGSPPLHGHPSTPHSPRSLSSVAPPPPSFSPHPPSQPSSAPSLPHSPNTAEPPESPLTPSSNDMPHKAPSSLPADLTPGERLLDFSMNGSPASHPPSLGLTHPGSAPPHFSWDPPLDSSGFPMLPSVSALSLTPPHGLFPSMDGCRNPLLNDLPESRHDNHILSKRKLGRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLKKDCLVGAEMLSAPSPGSGAHHTSGGGRGGGGGDKNSDELSISSTGPEPELGFNPYASFYSDFAFPIPVSMIHLLPQSEKNREFPALDDGRDRDDGDESANEEDRKPTHNGQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00630423;
- 90% Identity
- iTF_01348158;
- 80% Identity
- iTF_01348158;