Smay024922.1
Basic Information
- Insect
- Sipha maydis
- Gene Symbol
- -
- Assembly
- GCA_034509805.1
- Location
- JASXSY010001689.1:53174-55649[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.5 2.7e+02 3.5 0.2 6 21 10 25 5 26 0.84 2 13 0.024 4.5 9.1 0.2 2 20 32 50 31 52 0.92 3 13 4.1 7.6e+02 2.1 0.2 1 10 143 152 143 154 0.91 4 13 0.28 53 5.7 3.6 2 19 369 386 368 389 0.92 5 13 0.00059 0.11 14.2 0.9 1 23 423 445 423 445 0.97 6 13 0.8 1.5e+02 4.3 5.9 1 23 481 503 481 503 0.94 7 13 0.0003 0.056 15.1 0.7 2 23 514 535 513 535 0.96 8 13 0.0025 0.47 12.2 1.0 1 23 546 568 546 568 0.97 9 13 7.6e-07 0.00014 23.3 1.1 1 23 574 596 574 596 0.97 10 13 0.056 10 8.0 1.4 1 23 602 626 602 626 0.94 11 13 0.0026 0.48 12.2 1.8 1 23 632 654 632 654 0.97 12 13 0.00013 0.023 16.3 6.8 1 23 658 680 658 680 0.98 13 13 0.026 4.8 9.0 0.5 1 23 687 710 687 710 0.96
Sequence Information
- Coding Sequence
- ATGGAGAGTGTCGCGTGTCCACTTTGCTGTGAAGACAGATTTTCTAATCAAGACTTATTGAAATATCATTTACTGAGCTTAACCACAAACATCCAATGCCCTTTTTGTGGGAAACAATGTGATGACATCAACTCGTTAGTTGTGCATTTGGACAAGATGTGCACGGATAAAGAGGACGAGTCTGAGAAGACCCTGCTCGACAATGAAATGATTGTTGTTTATCCTGACGATGAACCTGACCTTGAAAACGAAATAGATGTATATGATAATCTAGTTAAAGAAGAAGATTATCAAAATGATGAACGACAAACGGATATTGATGCAGAAACtggagttaaaaaatttattgaagAATTTACTGATGATGATCCATCTAAAACAATAACACGGGCATCAGATACTGAGTCTCAAATAGAACAAAATGTTTATCACTGTTCagattgtaatataaatttcctATCAATTCAAGATCATATAGATAGCTGCCATAAAGGACAAGAAGTTGTATTTCAGGTTACTGAAAATGCAGATctcaatactttaaaaaatatggcTGAAATGATTGATAAACAAACTCCACAGTCAGGAACATGGATAAAATGGGGAAATGGCTACTTTTATACAAATCATTATGACTTGGTACAGgagcatttaaataaaaaacaatttatgaatataaataaatcagaaaaaaatgaaactactATAGAAGATGActtacaaacaattaaaattgaaagcgAAGACAAAGAACAGAATAATGCAGAACAAactgataacaaaatattgtatgcAAATATGTACACCAATCATTGTATTACTGATGCATATGGTGATCGTTACTTTGATACCCCTATTTATTTACTTCATCGAGTGGCTGAAGATGTCaatgattattttcaagttGAAGCCCGTAAGTTGAGTTTTAATAAACGAATTCGTGTCATAAGACTTAAATCTAACAATGATCATTTtagttttgaacaaatattatttcaaaataaaccatatgataacaaaattattccATCATTAGAAAAAGTAACGGATTGCAGTGAATATGCTCAATTAGAAAATATGGATAATTGTCTTTTGCTTACTTGGAAGTGTAAAGAGTGTAATGTAAGATCTGATCATTGGACTAAATTAAATAAGCATAACTGCAAAGAAGGTGAATTAGCAGTAtccaaatcaaaaaaaaatgtggaaaGCAAAAATCCAGCTTTAAGAAATAACAATCGGTCTCTTGTTACTAATCGTTCTCAGCATATTTGTCCACATTGTAATGGAGAGTTTGATTCAGAAGGTTATTTAAGAACACATCTAATGGTACACGTAAATGATTCAAATAAATGTCCATTCTGTGATCAACCGGTTGCACCAGAAATGATGGAGACTCATTTAATTGCTCATCAAAATCCTAAGTTTTCTAACTTAAAATTTCTATGCAAtgtatgtaataaatgttatgattCCGAATTTCGTCTCCGATGTCATCAAAGAGCACATGAAATGCGACGTAAACCACGTGAAGTATTGGTCTGTGATGTTTGTAATGCTCAGTTTAATgacaaaaattctttaaaacatCATGCCATTACACATATTGAACCACCTGAACGTTTACGTCGATTACACGAATGTCGTTTTTGTGGAAAAACTTTTGTTAAACCTATTGAAAAGGTTAATCATGAAAGAGTTCATACTGGTGAGAAACCTTTTGCTTGCCCAGTCTGTGGGCGTTGTTTTAGACTAAAGGATCTTGTGCAAAAACACATGCGAGTACATACCAAAGAAAGACCTTATAAATGCCGCCATGAAGGTTGTGAAAAAACATTTAGTGCTTCAAGTAGTAGAGTTAACCATGAACAAGGTCATTCTGGCATCAAgcaattcaaatgtttttattgtccTAGATATTTTAAGAATTGGGTGTCAAGGAGTAATCATGTTCAAGAACATATGGTTCAACACAAATGTGATATCTGTGATCGTTCATTTGTATCGTTTTGTAATTAtaagaaacatttgaaaatgcATGCAGAAGGACGACTTAAATTCAAATGTATGATTTGTCGCCAAGCATTtggaagacaattatttttagataaccaTTTGTCTAGTGAACACCAAATGAAAGCGCATAAAGGACACATAATAACATAA
- Protein Sequence
- MESVACPLCCEDRFSNQDLLKYHLLSLTTNIQCPFCGKQCDDINSLVVHLDKMCTDKEDESEKTLLDNEMIVVYPDDEPDLENEIDVYDNLVKEEDYQNDERQTDIDAETGVKKFIEEFTDDDPSKTITRASDTESQIEQNVYHCSDCNINFLSIQDHIDSCHKGQEVVFQVTENADLNTLKNMAEMIDKQTPQSGTWIKWGNGYFYTNHYDLVQEHLNKKQFMNINKSEKNETTIEDDLQTIKIESEDKEQNNAEQTDNKILYANMYTNHCITDAYGDRYFDTPIYLLHRVAEDVNDYFQVEARKLSFNKRIRVIRLKSNNDHFSFEQILFQNKPYDNKIIPSLEKVTDCSEYAQLENMDNCLLLTWKCKECNVRSDHWTKLNKHNCKEGELAVSKSKKNVESKNPALRNNNRSLVTNRSQHICPHCNGEFDSEGYLRTHLMVHVNDSNKCPFCDQPVAPEMMETHLIAHQNPKFSNLKFLCNVCNKCYDSEFRLRCHQRAHEMRRKPREVLVCDVCNAQFNDKNSLKHHAITHIEPPERLRRLHECRFCGKTFVKPIEKVNHERVHTGEKPFACPVCGRCFRLKDLVQKHMRVHTKERPYKCRHEGCEKTFSASSSRVNHEQGHSGIKQFKCFYCPRYFKNWVSRSNHVQEHMVQHKCDICDRSFVSFCNYKKHLKMHAEGRLKFKCMICRQAFGRQLFLDNHLSSEHQMKAHKGHIIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01434397; iTF_01170127; iTF_01346668;
- 90% Identity
- iTF_01346668;
- 80% Identity
- -