Basic Information

Insect: Periphyllus acericola
Gene Symbol: -
Assembly: GCA_949715065.1
Location: OX454266.1:30473480-30475990[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.2 1.7e+02 3.5 0.2 6 21 10 25 5 26 0.84

2 14 0.095 13 7.0 0.2 3 20 33 50 32 52 0.94

3 14 1 1.5e+02 3.7 0.2 1 12 144 155 144 158 0.88

4 14 0.31 44 5.4 3.8 2 19 374 391 373 394 0.92

5 14 0.00049 0.069 14.2 0.9 1 23 428 450 428 450 0.97

6 14 8.6 1.2e+03 0.8 0.1 2 20 456 473 456 477 0.68

7 14 0.67 95 4.3 5.9 1 23 486 508 486 508 0.94

8 14 0.00025 0.036 15.1 0.7 2 23 519 540 518 540 0.96

9 14 0.0021 0.3 12.2 1.0 1 23 551 573 551 573 0.97

10 14 6.4e-07 9e-05 23.3 1.1 1 23 579 601 579 601 0.97

11 14 0.046 6.6 8.0 1.4 1 23 607 631 607 631 0.94

12 14 0.0021 0.3 12.2 1.8 1 23 637 659 637 659 0.97

13 14 0.00011 0.015 16.3 6.8 1 23 663 685 663 685 0.98

14 14 0.021 3 9.0 0.5 1 23 692 715 692 715 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.2	1.7e+02	3.5	0.2	6	21	10	25	5	26	0.84
2	14	0.095	13	7.0	0.2	3	20	33	50	32	52	0.94
3	14	1	1.5e+02	3.7	0.2	1	12	144	155	144	158	0.88
4	14	0.31	44	5.4	3.8	2	19	374	391	373	394	0.92
5	14	0.00049	0.069	14.2	0.9	1	23	428	450	428	450	0.97
6	14	8.6	1.2e+03	0.8	0.1	2	20	456	473	456	477	0.68
7	14	0.67	95	4.3	5.9	1	23	486	508	486	508	0.94
8	14	0.00025	0.036	15.1	0.7	2	23	519	540	518	540	0.96
9	14	0.0021	0.3	12.2	1.0	1	23	551	573	551	573	0.97
10	14	6.4e-07	9e-05	23.3	1.1	1	23	579	601	579	601	0.97
11	14	0.046	6.6	8.0	1.4	1	23	607	631	607	631	0.94
12	14	0.0021	0.3	12.2	1.8	1	23	637	659	637	659	0.97
13	14	0.00011	0.015	16.3	6.8	1	23	663	685	663	685	0.98
14	14	0.021	3	9.0	0.5	1	23	692	715	692	715	0.96

Sequence Information

Coding Sequence: ATGGAGAGCGTCGCGTGCCCGCTCTGCTGCGAAGACAGGTTTTCCAATCAAGACTTGCTGAAATATCATTTACTGAGTTTGACCACTAACATCCTATGCCCGTTCTGCGGGAAACAGTGTGACGACATCAACTCGTTGGTCGTGCATTTGGACAAAATGTGCATCGAGAAAGACGACGAACCGGAGAAGTCTGTGATCGACAATGAAATGATTGTTGTTTATCCCGACGACGATGAACCTGATCCCGACGATGAAATAGACGTGTATGATAATCTAGTAAAAGAAGAAGATTATCAAAATGATGAACGACCAACAGATACCGATGGAGAAACTGGTGTTAAAAAATTTATCGAAGAATTTACTGTTGATGATTCATCTAAAGCAATGGCACAGGCATTAGACAGTGAACCTCAAGTAGAACAAAATGTTTATCACTGTTctgattgtaatataaatttccCATCGATTCAGGATCACATAGATAGCTGCCATAAAGGACAAGAAGTTGTATTTCAgGTTACTGAAAATGCAGATctcaataatactttaaaaaatatggcTGAAATGATTGATAAACAAACTCCACAGTCAGGAACATGGATAAAATGGAGGAATGGCTACTTTTATACAAACCATTGTGATGTGGTACAAGagcatttaaatgaaaaacaatttgtgAATGTTACTAAATCAGAAAAAAGTGCAACTTTAGAAACTACCAAAGAAGATatcttacataaaattaaaattgaaagccAAGACACAGTACAGAATAATGCTGAACAAActgataacaatatattttgtaccaaTTTGTATACAAATCATTGTATTACTGATGCATATGGTGATCGATATTATGATACCCCTATTTATTTACTCCATCGAGTAGCTGAAGATgtcaatgattattttcaagttGAAGCCCGTAAGTTGAGTTCTAATAAACGTATTCGTGTCATAAGACTTAAATCACACACTGATCGTTTTACttttgaacaaatattatttcaaaataaaccaAACAATTGCAATATTATTCCATCACTAGAAAACGTAATGGAGTGTAGTGAATACGCCCAATTAGAAAACATGGAAAATTGTCTTTTGCTAACATGGAAGTGTAAAGAATGCAATGTAAAATCTGACCATTGGACTAAGTTAAACAAACATAACTGCAAAGAAGGTGAATCAGCAgtgtcaaaatcaaaaaaaaatgtggaaagCAAAAATCCAGCTTTAAGAAGTAACAATCGATCAGTTTCTACTATCCGTTCTCAGCATATTTGTCCACATTGTAATGGAGAGTTTGATTCTGAAGGTTATTTAAGAACACATCTTATGGTACATGTAAATGATTCAAATAAATGTCCATTCTGTGATCAGCCGGTTGCACCAGAAATGATGGAGACTCATTTAATTGCTCATCAAAATCCTAAGTTCTCTAACTTAAAGTTTCTATGCAATGtgtgtaataaatgttatgattccGAATTTCGTCTTCGATGTCATCAAAGAGCACATGAAATGCGTCGTAAACCACGAGAAGTATTGGTTTGCGATGTTTGCAATGCTCAGTTTAATGACAAAAACTCTCTAAAACATCATGCCATCACTCATATTGAACCTCCTGAACGTTTACGTCGATTACACGAATGTCGTTTTTGTGGAAAAACATTTGTTAAACCTATTGAGAAAGTAAATCATGAAAGAGTACACACTGGAGAAAAACCTTTTGCCTGCCCAGTCTGTGGACGTTGTTTTAGGCTTAAGGATCTTGTACAAAAACACATGCGAGTACATACCAAAGAAAGACCTTATAAATGCCGTCATGAAGGTTGTGAAAAAACATTTAGTGCTTCAAGTAGTAGAGTTAACCATGAACAAGGCCATTCTGGCATCAAgcaattcaaatgtttttattgtcctagatattttaagaattggGTGTCGAGAAGTAATCATGTTCAAGAACACATGGTAAAACATAAATGTGACATCTGTGATCGTTCATTTGTatcattttgtaattataagaaacatttgaaaatgCATGCAGAAGGACGACTTAAATTCAAATGTATGATTTGCCGTCAAGCATTTGgaagacaattatttttagataatcaTCTATCTAGTGAACACCAAATGAATGCCCATAAAGGACATATAACAACATAA
Protein Sequence: MESVACPLCCEDRFSNQDLLKYHLLSLTTNILCPFCGKQCDDINSLVVHLDKMCIEKDDEPEKSVIDNEMIVVYPDDDEPDPDDEIDVYDNLVKEEDYQNDERPTDTDGETGVKKFIEEFTVDDSSKAMAQALDSEPQVEQNVYHCSDCNINFPSIQDHIDSCHKGQEVVFQVTENADLNNTLKNMAEMIDKQTPQSGTWIKWRNGYFYTNHCDVVQEHLNEKQFVNVTKSEKSATLETTKEDILHKIKIESQDTVQNNAEQTDNNIFCTNLYTNHCITDAYGDRYYDTPIYLLHRVAEDVNDYFQVEARKLSSNKRIRVIRLKSHTDRFTFEQILFQNKPNNCNIIPSLENVMECSEYAQLENMENCLLLTWKCKECNVKSDHWTKLNKHNCKEGESAVSKSKKNVESKNPALRSNNRSVSTIRSQHICPHCNGEFDSEGYLRTHLMVHVNDSNKCPFCDQPVAPEMMETHLIAHQNPKFSNLKFLCNVCNKCYDSEFRLRCHQRAHEMRRKPREVLVCDVCNAQFNDKNSLKHHAITHIEPPERLRRLHECRFCGKTFVKPIEKVNHERVHTGEKPFACPVCGRCFRLKDLVQKHMRVHTKERPYKCRHEGCEKTFSASSSRVNHEQGHSGIKQFKCFYCPRYFKNWVSRSNHVQEHMVKHKCDICDRSFVSFCNYKKHLKMHAEGRLKFKCMICRQAFGRQLFLDNHLSSEHQMNAHKGHITT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01347507;
90% Identity: -
80% Identity: -