Smay002339.1
Basic Information
- Insect
- Sipha maydis
- Gene Symbol
- -
- Assembly
- GCA_034509805.1
- Location
- JASXSY010000141.1:220352-223828[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.9 9e+02 1.9 1.7 3 23 9 29 7 29 0.93 2 15 0.94 1.7e+02 4.1 0.1 2 23 328 350 327 350 0.81 3 15 0.096 18 7.2 0.1 2 21 383 402 382 405 0.86 4 15 0.023 4.2 9.2 0.1 3 23 412 433 411 433 0.96 5 15 0.025 4.7 9.1 6.0 3 23 437 457 436 457 0.98 6 15 7.8e-06 0.0014 20.1 0.4 1 23 463 485 463 485 0.98 7 15 8.8e-07 0.00016 23.1 1.6 1 23 491 514 491 514 0.97 8 15 0.0075 1.4 10.7 1.3 5 23 526 544 523 544 0.96 9 15 0.00016 0.03 15.9 3.5 2 23 550 572 549 572 0.96 10 15 0.1 19 7.2 2.3 2 23 588 608 587 608 0.96 11 15 3e-06 0.00056 21.4 1.4 1 22 614 635 614 636 0.92 12 15 0.0049 0.91 11.3 2.0 1 23 644 666 644 666 0.99 13 15 0.00033 0.061 15.0 5.4 1 23 672 694 672 694 0.97 14 15 1e-06 0.00019 22.9 4.3 1 23 701 723 701 723 0.98 15 15 0.001 0.19 13.4 10.2 1 23 729 751 729 752 0.95
Sequence Information
- Coding Sequence
- ATGAATCAAGATTCTCAATCATGTTGTCCAGTTTGCACATTGTACTTACGTCCAGGGATATCCCTTCATACCCACTTGAATACACATCCCAAAAAACACGTCATAAAAGCTTTATTATTACTAGCCAATCAATTACCACAGCCATCCAAACTTACCGAACAATCAGAAGAGAACCTTTCAGATGACAGTAGTTCAACATCTTCAAGATCTTCTCATTCAGTTACCTTTAATACTCCAGATGGAGTACAAACCACCGAAAGAAATAATGCAAGTAGCTGTCCATCGCCTAAAAGTCAAAACAGTCAAGCACTTTCAGAGCTTCGAGATGCTCTTGAAGAAAATCAAGAAGATGACATGGATATTGATGATAACAATATTACTTTTGAAGATGAATATCGACAAGAATTTGAAGAAGACCAACTTGATGGTAGCATTAGTTTTCAAGGAGAATCAAATGAATCAACTCAACATCGTGAAGTGTCAGAAGAAACGGGCTCATCTATTGCAGAAAATTATCGTGATCCATTTCAATCAAACAGTAACCTAATTGAAGATGAAGAATATATGTCACGCTACTTTTATTCTAGTGAAAATGCTCGTATATCACATACTGATCCAGATCCTCAACTCAATCCTCCTCAATATAGTACTCTTACTACAATGGAGTTACACCCAGAATATTTATCTTCAAATCATCAAGATCATCAATTAACTTTAGATATTCAGACAGATGAACTTATGCCAGCTCATGGGGAATTATCTGGTCAAGAAAGCTTAGAACCTCCTGAACCAATACTTGCATCTATATGGACAATGAAAAACGGTGATGAGTCTCAGCCTCATACAAGTACTGCATGGGATGATACTGTTCATGAAGTTAGTACTGCTGCTAGAaatttaatgtgtttaaaaaacaGAGAAGAAATTCCTAAAGAAGAGATTATagagaaaaaagaagaaaaaccaTTGTTGGGAAAACTTATTTGTCCATACTGCAAGTTAAAATTTGATGGAGTTAAAGTACGTAAAGCGCATATAAATGAAGAACATAAGAATGAAGAAGGTGTAAAGAAAGgcttaatgtatattaaaccATTTTCAACTAAACTAGAAAATGAAGAAGATGACCATCAATACTTGAAAGTAGAGTGTGGTATTTGTGGTCAAGCATTTGAAGATTATATGAAAATGACATTGCATTTCATTGATACTCATAAagataagaataatttatgtCCAACATGTAACACAGTTTTTCCTATGATAACAGATTTTCGAGAACATATACTAAATGTTCATCCACTGCTATGTAGTTTTTGTTCAAGGAAATTTCATTCTCAATTTACTTTAACTACGCATTTGAAACGTCATCTACAAATTAAGCCATACGTCTGTGATCAATGTAATAAGAGTTTTGTCAGTCGAGTTAGACTCCAAGATCACATGAATggtcatttaaatataaaaccatataacTGTTCTCGGTGTGATCTTTCCTTTAGAAGTAGAGCAAATTTAAATAGTCATATGCGTAAATTACATCAGTCTACTGGGACTCCAAAAGATTTTTACTGTCATTGTGGAGAGgtatTCACATCATTAAAAAAACTTGCATGGCACAAGGAAACCCATGAAGTCAAGCCCAAACAATGTCAATGGTGTTCGGAACGTTTTATACACTTATCTTCATTGACTAGGCATATACGACATGCACATGATTCATCTTATTTACCTTCAAAAGATCGTGATATCGAAAATATGAGCTGTCATATatgcaataatacatttttacgtaaATCATTCGCTACTCATATGCTTATTCATAAAGATTTAAGACCTTATTCGTGCAATATTTGTAATCGATCATTTCGTACCAAATGGAATTTGAGAATGCATCAATGGACTCATATGTCTCGAACACATAAACCTTATAAATGTACCCAGTGTAAAAGTGCATTTTATCTCAAACATGAATGGGAGGCTCATGTTCGTTCCCACAATGGAGTTCGGCCATTTACGTGCAATGAATGCGGCAAGCAATTTATTAGGAAGAAACATTGTATGAGACATATGGCAGAACATGAAGAAGGCAATCGTTCATTTGAATGCAAAGAATGTGGAAAGAAgtttcaTCGTAGTTATTATCTGACGGATCATATTAAAACGCACACTGGACAAAAACCTCATACGTGTCATATATGTGGCAAAACAACTAGTTCTAAGTCTAATCATAACAAACATGTTCGTACACACCATGCTAGAGAATCGGTAAATACTGAAGGTTaa
- Protein Sequence
- MNQDSQSCCPVCTLYLRPGISLHTHLNTHPKKHVIKALLLLANQLPQPSKLTEQSEENLSDDSSSTSSRSSHSVTFNTPDGVQTTERNNASSCPSPKSQNSQALSELRDALEENQEDDMDIDDNNITFEDEYRQEFEEDQLDGSISFQGESNESTQHREVSEETGSSIAENYRDPFQSNSNLIEDEEYMSRYFYSSENARISHTDPDPQLNPPQYSTLTTMELHPEYLSSNHQDHQLTLDIQTDELMPAHGELSGQESLEPPEPILASIWTMKNGDESQPHTSTAWDDTVHEVSTAARNLMCLKNREEIPKEEIIEKKEEKPLLGKLICPYCKLKFDGVKVRKAHINEEHKNEEGVKKGLMYIKPFSTKLENEEDDHQYLKVECGICGQAFEDYMKMTLHFIDTHKDKNNLCPTCNTVFPMITDFREHILNVHPLLCSFCSRKFHSQFTLTTHLKRHLQIKPYVCDQCNKSFVSRVRLQDHMNGHLNIKPYNCSRCDLSFRSRANLNSHMRKLHQSTGTPKDFYCHCGEVFTSLKKLAWHKETHEVKPKQCQWCSERFIHLSSLTRHIRHAHDSSYLPSKDRDIENMSCHICNNTFLRKSFATHMLIHKDLRPYSCNICNRSFRTKWNLRMHQWTHMSRTHKPYKCTQCKSAFYLKHEWEAHVRSHNGVRPFTCNECGKQFIRKKHCMRHMAEHEEGNRSFECKECGKKFHRSYYLTDHIKTHTGQKPHTCHICGKTTSSKSNHNKHVRTHHARESVNTEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00670437; iTF_01434354; iTF_01170082; iTF_00469123; iTF_00309020; iTF_01330806; iTF_00418496;
- 90% Identity
- -
- 80% Identity
- -