Basic Information

Insect: Sipha maydis
Gene Symbol: -
Assembly: GCA_034509805.1
Location: JASXSY010001987.1:63569-70374[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 8.4 1.6e+03 1.1 2.5 1 10 254 263 254 265 0.90

2 9 2.9e-08 5.4e-06 27.7 0.9 1 23 289 311 289 311 0.98

3 9 2.2e-05 0.0041 18.7 2.2 1 23 317 339 317 339 0.98

4 9 4.3e-06 0.0008 20.9 0.5 1 20 345 364 345 365 0.95

5 9 0.0001 0.019 16.6 6.9 1 23 380 403 380 403 0.97

6 9 1.9e-06 0.00036 22.0 4.4 1 23 418 440 418 440 0.97

7 9 1.5e-06 0.00028 22.3 4.4 3 23 508 529 507 529 0.98

8 9 6.5e-07 0.00012 23.5 3.3 2 23 557 579 556 579 0.94

9 9 3.8e-05 0.007 17.9 0.2 1 23 589 611 589 611 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	8.4	1.6e+03	1.1	2.5	1	10	254	263	254	265	0.90
2	9	2.9e-08	5.4e-06	27.7	0.9	1	23	289	311	289	311	0.98
3	9	2.2e-05	0.0041	18.7	2.2	1	23	317	339	317	339	0.98
4	9	4.3e-06	0.0008	20.9	0.5	1	20	345	364	345	365	0.95
5	9	0.0001	0.019	16.6	6.9	1	23	380	403	380	403	0.97
6	9	1.9e-06	0.00036	22.0	4.4	1	23	418	440	418	440	0.97
7	9	1.5e-06	0.00028	22.3	4.4	3	23	508	529	507	529	0.98
8	9	6.5e-07	0.00012	23.5	3.3	2	23	557	579	556	579	0.94
9	9	3.8e-05	0.007	17.9	0.2	1	23	589	611	589	611	0.98

Sequence Information

Coding Sequence: ATGGCGCACGACGATGAAGATGCCGATGGCCAATCGGTGACGTCGGTCAGCTGCCGGTTGTGCTGTACACCTTCGGTGGCCGTCGGTCAACGGCACCCGATcatcaccgccgccgccgccgccacggACGACGGTGGCGATGGGACACGCCCCGGCGGCCGAGGATTACGCGACACCATCGTCAAGCACCTGCGGATACAGgtTTCTGAAGATGATGGTTTATCCAAAATTGTTTGCACTAAATGCTTAACATTGTTAAATGAATGGGATCAATTTTATGAGATGTGctcaaaaaataacaacatgCACCTGAAGCCAATGTCTGACGTAGATGATAAAAACGATGATGGCGATGAATCtgcaaataatttagttatagatATTACAGATGAAGACGAAGAACAAAATCACAGCTATACAAGTGTCGATAAAAATAAGACAAAAATCCCAAAAAAGTCAATCCTTGGGGAACCTTCACCGGAAGATTATGTATTGATGAAAGAAGAAACTTTCAATTTAGAGCCgAAAAATGGACCAACAGGTGTTTTGGGtgattatttaatagaatataacAATTGCAAAAAGTTACCAAATGATGTGAATAGTGCAGACAAAGACATTGTTGACAATTTACGCATAAGAAGAGAAGTGTTACCATCTATGTGGgatgtatttgaaaaaactgTTGAAAAGCTAAAATCtggagaGACATGTGCTACGTTAGTTACTCATAGACGTTATATAACTAACAAAGGTGCATTCCCTTGTTCATTGTGTGGAGAATGTTATGAGTTTGACCAAGGTGTTTGTCGTGATGAAGAAGAACCACAACCGCCAGTTGAAGTTGATATTCAACAGCGTTTATTCATTTGTCCGACATGCGGGAAGTCTTTCCCTCGTCGAAGTTCATGGAAACGTCACCAAATGACTCATGAAGATGTAAAACCTTATGTCTGTCGTATTTGCACCAGTGGTTTTAACCGTAAAGAACATTTGATGCGGCATATGTTATCACACAGTACTGTAAGACCATTTCCTTGTGAACGTTGTGGGAAACGGTTTATACGCAAAGAGCATTTGGCTAGACATCTTTTATGTATACCAAGTTGTTCTAATTCATCCGACATGCCAAGACCATTCTGTTGTGATATTTGTAAACAAAGATTCGTGCGTAAGGAACATTTGTTTAGGCATAGAAAAAGAGCCCATGAACATGCATTGATAGTAGACAATCAATTAGAAGAGAAACCATTTGTGTGTTGGCAATGTGGCAAATGTTTTACTCGCTATGAACACCTACGCAAACATTTGGATATTCACAATGGTATTATTCCTTCTTCTTCCTCAGCAATACTTCCTGAAGTAACTTTATCAGAAATAAAAGTCGAAGATATGTCAGTAGATGTTAAGACAGACAATTTATCCGAATCTGAAGGTGAATCCGAAGTACTACCCCCAGTAAGTGTACTAGAACTTAATGAACAACAGCCTGAACAAGGAAGACCTAAACCTAGTACTCTTTGTACTATttgcaaaaaaacattttctcgtCGTAGTCACTTATTGCGTCATTTGAAACGTATACACAAAGTAGAACCTGTGTTAACTAGGAGGCGAGTAAACAAATCTGGTGATGAAAATGGTAACTCTATAGAAGAAACCAAATGGGAATGTCATACATGTGGAAAGACATTTTCCAGGCAAGCTCATCTTGAGAGGcatgaaaaaaatttgcatAGCGAAGATCGAATGGTACCAGCTCCTTACGAATGTGTCTCTTGCGGCCAAGCATTTTTTGATAGTAATTTACTGAATCAGCACATGGCTACTCATGGAAATACTGTGACTGATAATTTTGTTTGGATGTGA
Protein Sequence: MAHDDEDADGQSVTSVSCRLCCTPSVAVGQRHPIITAAAAATDDGGDGTRPGGRGLRDTIVKHLRIQVSEDDGLSKIVCTKCLTLLNEWDQFYEMCSKNNNMHLKPMSDVDDKNDDGDESANNLVIDITDEDEEQNHSYTSVDKNKTKIPKKSILGEPSPEDYVLMKEETFNLEPKNGPTGVLGDYLIEYNNCKKLPNDVNSADKDIVDNLRIRREVLPSMWDVFEKTVEKLKSGETCATLVTHRRYITNKGAFPCSLCGECYEFDQGVCRDEEEPQPPVEVDIQQRLFICPTCGKSFPRRSSWKRHQMTHEDVKPYVCRICTSGFNRKEHLMRHMLSHSTVRPFPCERCGKRFIRKEHLARHLLCIPSCSNSSDMPRPFCCDICKQRFVRKEHLFRHRKRAHEHALIVDNQLEEKPFVCWQCGKCFTRYEHLRKHLDIHNGIIPSSSSAILPEVTLSEIKVEDMSVDVKTDNLSESEGESEVLPPVSVLELNEQQPEQGRPKPSTLCTICKKTFSRRSHLLRHLKRIHKVEPVLTRRRVNKSGDENGNSIEETKWECHTCGKTFSRQAHLERHEKNLHSEDRMVPAPYECVSCGQAFFDSNLLNQHMATHGNTVTDNFVWM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00309001;
90% Identity: iTF_00184788;
80% Identity: -