Smay015926.2
Basic Information
- Insect
- Sipha maydis
- Gene Symbol
- bab2
- Assembly
- GCA_034509805.1
- Location
- JASXSY010000973.1:172397-176558[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.3e-11 3.1e-08 34.4 0.0 2 38 416 453 415 458 0.89 2 4 1.2e-11 1.1e-08 35.8 0.1 2 39 470 507 469 510 0.94 3 4 1.1e-16 1e-13 51.9 0.0 3 45 526 569 524 569 0.97 4 4 1.4e-16 1.3e-13 51.6 0.1 1 43 576 619 576 621 0.96
Sequence Information
- Coding Sequence
- ATGACAGTAAATGGCCAACATTACTGTCTCCGCTGGAATAATTACCAATCAAACATGACATCTGTATTTCATCAACTTTTACGAAATGAATCATTTGTTGATGTTACACTTGCTTGCAATGAGAGTACATTAAAAGCtcataaagTAGTCTTATCTGCTTGTTCGTCATACTTTCAGAAACTCTTAATGGATAACCCATGCAAGCATCCTACAATCATATTGCCCTATGACATTTGTTTTAATGATCTTAAGTTCATTATTGAGTTTGTTTATAGGGGTGAAATTGATGTATCACAAGCTGAATTACAATCACTCCTAAAGACAGCTGACCAGCTGAAAATTAAAGGATTATGTGAAGTGCCTGAAGATGAACGAGATACATCTATTGTTGCTGAAGTAACTCCTTTGGGACCAATGAAAAGTGGAGGACGAGTTTTCACAAAATTACAACGTAGAACTTcaccttatttaaaaaaaatgagtcCAAATCATATGCAACAGGATCAATTCAACCGAAGTTATTATCGAATTGAACAATCTGGATTTACACCCATTAATGTTGATCAAGAGAACAAATCCAtgagtTCTATCCACTGCATGACTGTAGCTACATCAACCGAAGATGATGAAAAAGAGATGAAATCAACACTTACTGATTTACCGGTTGTCATTTTAGAGCCACATCCTACATTAAATTTACAGACACAGCAACAGCCCCAGATTGTTCATATACCTTTACCACAACAACAACTGAATCATGTAACTCAACACTCAAACCAAACAGAGCTACAGCAAGCTGCTGTTCAAACTCATTCACaaatGCTTATCACAAGCGGTTCAGTTATGACAGTTAACGAAGCTGATATTACACCTGACATACAACCAGTTGGACCAAGAGCCACACCAgtatcagtaaaaaataatattagtcccTCTTCAACGCCTACACATAGAGATATGGCTGttggTACCTCATGTTCAAATGATGTAAGTGAAGTAAAATTTGAAAGTACTAAATTTGAAACTCTTCGTACTATTGATCAGTCATCAGATGCAATTGGAATAGATAGGCAACATTCAAGTGatcataatataaatgaTGAAGATAATTCAATGCATACCATGATGATAACACCTGAACTATTAGGCTTGTTACCAAATTCGTCAAGTACAGGagatATCAGCGAAGATGgttctaataatataaacaaacacTATGGTGCAAATGGTGGCAAAGGATGGACAGCTGATGATATGGAGAATGCTCTTGAAGCATTAAGGTCTCATAATATGTCTTTGACCAAAGCATCTATAACATTTGGAATTCCTTCTACAACGTTATGGCAGCGAGCGCATCGAGCTGGTATAGATACTCCTAAGAAAGATGGACCTGCTAAGTCTTGGAATGATGAAGCCTTGAATATTGCATTAGATGCTCTACGCACTGGCTCTATTTCAGCGAATAAAGCTAGTAAAGCTTATGGCATACCTAGTAGTACTTTATACAAGATTGCAAGGCGTGAAGGTATTCGTTTAGCTGCTCCATTTAATGCCGCACCAACGTCTTGGGGTCAAGAGCAGTTAGAACAAGCACTTCATGCCATTCGAACTGGACAAATGACTGTACAACGAGCTGCAGCTGACTATGGTATACCCTCTGGTACATTATATGGACGGTGTAAacgtgaaaaaattgaattgtctCGCAGTAATCCAACACCATGGTCTGAAGATGCAATGATGGAAGCCTTGGAATCTGTACGTTTAGGACATATGAGTATTAATCAGGCggctatacattataatttaccatATTCTTCGTTGTATGGTCGTTTTAAAAGAGTAAAATATGGAGCTGGACATCCTGATGATGATTGTGATGATATGATTGATTCAGACACTCAAGGCGAACAACCACATTtgcaacaacagcagcagcaacaacaacaacaacaacaacaacaacagcaacaacaaccgCCCAATCAACAAGTTCAGGCTACTCCTATGTCTCAAATCATGCTGGTACAATATCCAGCCCCACAAATTCAAATGTACCAGCAAAATTCTACTCATTCAACAACTAGTTGA
- Protein Sequence
- MTVNGQHYCLRWNNYQSNMTSVFHQLLRNESFVDVTLACNESTLKAHKVVLSACSSYFQKLLMDNPCKHPTIILPYDICFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPEDERDTSIVAEVTPLGPMKSGGRVFTKLQRRTSPYLKKMSPNHMQQDQFNRSYYRIEQSGFTPINVDQENKSMSSIHCMTVATSTEDDEKEMKSTLTDLPVVILEPHPTLNLQTQQQPQIVHIPLPQQQLNHVTQHSNQTELQQAAVQTHSQMLITSGSVMTVNEADITPDIQPVGPRATPVSVKNNISPSSTPTHRDMAVGTSCSNDVSEVKFESTKFETLRTIDQSSDAIGIDRQHSSDHNINDEDNSMHTMMITPELLGLLPNSSSTGDISEDGSNNINKHYGANGGKGWTADDMENALEALRSHNMSLTKASITFGIPSTTLWQRAHRAGIDTPKKDGPAKSWNDEALNIALDALRTGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWGQEQLEQALHAIRTGQMTVQRAAADYGIPSGTLYGRCKREKIELSRSNPTPWSEDAMMEALESVRLGHMSINQAAIHYNLPYSSLYGRFKRVKYGAGHPDDDCDDMIDSDTQGEQPHLQQQQQQQQQQQQQQQQQQPPNQQVQATPMSQIMLVQYPAPQIQMYQQNSTHSTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00184731;
- 90% Identity
- iTF_01330472;
- 80% Identity
- iTF_01347349;