Sflv005543.1
Basic Information
- Insect
- Sipha flava
- Gene Symbol
- bab2
- Assembly
- GCA_003268045.1
- Location
- NW:271275-280091[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.3e-13 2.9e-10 39.2 0.0 4 45 388 429 385 429 0.92
Sequence Information
- Coding Sequence
- ATGACTAATAATCAAATGAATACAATTTCTGGTCAGGACCAACAATACTGTTTGAGATGGAATAATCACCAGACAAATCTAACAAATGTATTTGTTCAACTATTTCAATCTGAAGAATTTACTGATACTACATTATTTTGTGAGGGTGGGCCACCAGTTAAATGTCATAAAATGGTGTTAGCTGCATGTTCTTCGTACTTTCAGTCAGTATTTGCTGAAGTACCTGGTAAACATTCTGCAGTTGTTTTGAAAGATGTTGGCCATGCTGAAATGAAAGCTATACTGGACTATATGTACAAAGGTGAAGTGAATATTGCGCATGACCAATTAGCTGCTCTACTCAAAGTCGCAGAGATGCTTAAAGTTAAAGGGCTTGTTCAAGATAATTCACACAAAACGGAAAGACCAATAACGCCTGCTGTTGAAGAAGATCGCAATATAATTAGTACTTCATCTCCAAATCATGTATCACCAGATGGTAATACGAGTACGACCAAAGATCTTGccattaatattaacaacaacaaTGAACAAAATGATTCACCTCCACACAGTACTGGTATAAACCACCAATCACCATtctataataagaattattatggaAAATCTCCACCATTAACAACTGAACATAGTAGACCTGGAAGAAGTAATGTTCCGATGTGGCCAATACCTGCTTTACAGATGACATCAACACCTGTGACTAATGCTATGTTTGGAGGTAGTTATGATGCTATGATCGCAGGATATCCAGGAATGTCACCATTGCGCCGTAAAAAGCTATCTAGTATGTTGATGGGTCGAGACACACCAATATTAAGGACTGTTCTTGGTCAGGGGCAAGCTGATTCTTCACAGCAACTCCCTCCTATTATGTATGGTTCTGAAGCTATAGAACACCAAAGACCCCAGTCTAATGGATCTGAATATGGTAGTCAATTTTCAAagATCAAAGTAGAAGGGTCAGAACATAATTCTCCATATCCTCCAGATTTGTCCATGAATGATGATGAAGAAAATATGAGGattggaaaattgaataattcatCTTCACCTCAATCAATGTATGGTGATTCAAAAggTGGTGTTGTAACTCCAGGGATTGCAACTTATGTTCCTTCTCATAAACCAGAATGGAAAAGATATAAACAATACACAAGACAAGATATTATGTCTGCAATAGACGCTGTGCGAACTGGCATGAGTGCCTTACAAGCTTCACGAAAATTTGGAGTTCCATCTCGTACCCTTTATGACAAAGTGAAGAAACTTGGAATAACTACAAGCCGTCCATTTCGCAGATCAGGAGTTAATAACGGAAACCTTGGATTTGGATATGGATTAGGGCCTGGTACTAGTAGTGTAATGTTTTCAAGTCAAATGTCTGGAGCTGAAGATGAATCTGGTCATTCTTCAGCTATGGAACATGCAACCGCTGGTTTCTTACACCACGCTCTTGGATTATCTGGAGTCTCTATAAAGTCTGATCATGAAACTTCTAACAATGGAAATTCACCTCATTCGGATAGAATGGATGATGGAGGTTCACCATGTAGTCCAgaactaataaaatatgctgGACATCGGGAGGATATTAGATCGCCAACTCCAACAGAAAATGATGATCAAGCACAAGATTTATCTGTATCTCGTAAATCTGAGTCGTCACCAATGCAAACAACTCCTACATCTAGAGTTATTATGGGACCACTTAATCAAACTGTTAGCTGTCCCGTGTTAGCTGCTGGTAATGATGATAGGgactga
- Protein Sequence
- MTNNQMNTISGQDQQYCLRWNNHQTNLTNVFVQLFQSEEFTDTTLFCEGGPPVKCHKMVLAACSSYFQSVFAEVPGKHSAVVLKDVGHAEMKAILDYMYKGEVNIAHDQLAALLKVAEMLKVKGLVQDNSHKTERPITPAVEEDRNIISTSSPNHVSPDGNTSTTKDLAININNNNEQNDSPPHSTGINHQSPFYNKNYYGKSPPLTTEHSRPGRSNVPMWPIPALQMTSTPVTNAMFGGSYDAMIAGYPGMSPLRRKKLSSMLMGRDTPILRTVLGQGQADSSQQLPPIMYGSEAIEHQRPQSNGSEYGSQFSKIKVEGSEHNSPYPPDLSMNDDEENMRIGKLNNSSSPQSMYGDSKGGVVTPGIATYVPSHKPEWKRYKQYTRQDIMSAIDAVRTGMSALQASRKFGVPSRTLYDKVKKLGITTSRPFRRSGVNNGNLGFGYGLGPGTSSVMFSSQMSGAEDESGHSSAMEHATAGFLHHALGLSGVSIKSDHETSNNGNSPHSDRMDDGGSPCSPELIKYAGHREDIRSPTPTENDDQAQDLSVSRKSESSPMQTTPTSRVIMGPLNQTVSCPVLAAGNDDRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00418207;
- 90% Identity
- iTF_01170003;
- 80% Identity
- iTF_01346566;