Sflv004646.1
Basic Information
- Insect
- Sipha flava
- Gene Symbol
- bab2
- Assembly
- GCA_003268045.1
- Location
- NW:618739-626517[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.7e-12 9.6e-09 34.3 0.0 2 38 418 455 417 460 0.89 2 4 2.8e-12 3.5e-09 35.7 0.1 2 39 472 509 471 512 0.94 3 4 1.8e-16 2.3e-13 49.1 0.0 3 45 528 571 526 571 0.97 4 4 3.3e-17 4.1e-14 51.5 0.1 1 43 578 621 578 623 0.96
Sequence Information
- Coding Sequence
- ATGACAGTAAATGGCCAACATTACTGTCTCCGCTGGAATAATTACCAATCAAACATGACTTCTGTATTTCATCAACTTTTACGGAATGAATCATTTGTTGATGTTACGCTTGCTTGTAATGAGAGTACATTAAAAGCTCACAaaGTAGTCTTATCTGCTTGTTCGTCATActttcaaaaactattaatgGATAACCCATGCAAGCATCCTACGATAATATTGCCCTATGACATTTGTTTTAATGATCTTAAGTTCATTATTGAGTTTGTCTATAGGGGTGAAATTGATGTATCACAAGCTGAATTACAATCACTTCTAAAGACAGCTGACCAGCTGAAAATTAAAGGATTGTGTGAAGTGCCTGAAGATGAACGTGATACATCTATTGTTGCTGAAGTAACTCCTTTGGGACCAATGAAAAGTGGAGGACGAGTTTTCACAAAATTACAACGCAGAATTTCAccttattcaaaaaaaatgagTCCAAATCATATGCAGCAAGATCAATTCAATCGAAGTTATTATCGAATTGAACAATCTGGATTTGCACCCATTAATGTTGATCAAGAGAACAAATCTATGagtTCTATTCACTGCATGACTGTAGCTACATCAACTGAAGATGATGAAAAAGAGATGAAATCAACACTTACTGATTTACCGGTTGTCATTTTAGAGCCACATCCTGCATTAAATTTGCAGACCCAGCAACAACCCCAGATTGTTCATATACCTATATCACAACAACAATTGAATCATGTAACTCAACACTCAAACCAATCACAGTTGCAACAAACTGCTGTTCAAACTCATTCTCAAatGCTTATCACAAGTGGTTCAGTTATGACAGTTAACGAAGGTGATATTACGCCTGACATACAACCTGTTGGACCAAGAGCAACACCAgtatcagtaaaaaataatattagtccCCCTTCAACACCTACGCATAGAGATATGGCTGttggtaCCTCATGTTCAAATGATGTAAGTgaagtaaaatttgaaaatactaaATTTGAAACACTTCGTACTATTGATCAATCGTCAGATGCAATTGGAATAGATAGACAACATTCAAGTGATCATGtagtaaatataaatgaaGAAGATAATTCAATGCATACCATGATGATAACACCTGAATTATTAGGCTTGTTACCAAATTCATCAAGTACAGGAGatatcAGCGAAGATagttctaataatataaataaacattatggTGCAAATGGTGGCAAAGGATGGACAGCTGATGATATGGAGAATGCTTTAGAAGCATTACGGTCTCATAATATGTCTTTAACCAAAGCATCCATAACATTTGGAATTCCTTCTACAACGTTATGGCAGCGAGCTCATCGAGCTGGTATAGATACTCCTAAGAAAGATGGACCTGCTAAGTCTTGGAATGATGAAGCCTTGAATATTGCATTAGATGCTCTACGTACTGGCTCTATTTCAGCAAATAAAGCTAGTAAAGCTTATGGCATTCCTAGTAgtactttatataaaattgcaAGACGGGAAGGTATTCGTTTAGCTGCTCCTTTTAATGCCGCACCAACATCTTGGGGTCAGGAGCAGTTAGAACAAGCATTGCATGCAATACGAACTGGGCAAACAACTGTACAACGAGCTGCAGCCGACTATGGTATACCCTCTGGTACATTATATGGACGGTGTAAAcgtgaaaaaattgaattgtctCGTAGTAATCCAACACCATGGTCTGAAGATGCAATGATGGAAGCTTTGGAATCTGTACGTTTAGGTCATATGAGTATTAATCAAGCAGCTATACATTATAATCTACCATATTCTTCGTTGTATGGTCGTTTTAAAAGAGTAAAATATGGAGCTGGACATCCAGATGATGATTGTGATGATATGATTGATTCAGACACTCAAGGTGAACAACCACATttgcaacaacaacagcagcagcagcaacaacaacagcagcagcagcagcaacaacaacaacagcagcagcaacaacaacaacaacaacagcagcaacaacaacaacagcagcaacaacagcaacaacaacaacaacaacaaacaCCTAATCAACAAGTCCAGGCTACTCCTATGTCTCAGATCATGCTGGTACAATATCCAGCCCCACAAATTCAAATGTACCAGCAACATTCTATTCATTCATCAACTAGTTGA
- Protein Sequence
- MTVNGQHYCLRWNNYQSNMTSVFHQLLRNESFVDVTLACNESTLKAHKVVLSACSSYFQKLLMDNPCKHPTIILPYDICFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPEDERDTSIVAEVTPLGPMKSGGRVFTKLQRRISPYSKKMSPNHMQQDQFNRSYYRIEQSGFAPINVDQENKSMSSIHCMTVATSTEDDEKEMKSTLTDLPVVILEPHPALNLQTQQQPQIVHIPISQQQLNHVTQHSNQSQLQQTAVQTHSQMLITSGSVMTVNEGDITPDIQPVGPRATPVSVKNNISPPSTPTHRDMAVGTSCSNDVSEVKFENTKFETLRTIDQSSDAIGIDRQHSSDHVVNINEEDNSMHTMMITPELLGLLPNSSSTGDISEDSSNNINKHYGANGGKGWTADDMENALEALRSHNMSLTKASITFGIPSTTLWQRAHRAGIDTPKKDGPAKSWNDEALNIALDALRTGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWGQEQLEQALHAIRTGQTTVQRAAADYGIPSGTLYGRCKREKIELSRSNPTPWSEDAMMEALESVRLGHMSINQAAIHYNLPYSSLYGRFKRVKYGAGHPDDDCDDMIDSDTQGEQPHLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQTPNQQVQATPMSQIMLVQYPAPQIQMYQQHSIHSSTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00184731;
- 90% Identity
- iTF_01330472;
- 80% Identity
- iTF_01346562;