Suni008203.1
Basic Information
- Insect
- Silvanus unidentatus
- Gene Symbol
- ECU06_1150
- Assembly
- GCA_963930825.1
- Location
- OZ005759.1:1676341-1677847[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0014 5.8 7.3 0.1 21 48 296 323 278 325 0.83 2 4 0.16 6.7e+02 0.7 0.0 16 40 348 372 331 386 0.79 3 4 0.0043 17 5.8 0.2 18 43 406 431 398 436 0.91 4 4 7.4e-06 0.03 14.6 0.1 21 48 437 464 432 469 0.92
Sequence Information
- Coding Sequence
- ATGACTGAGATTGAGTTAAAAGACCCTTCATTGACGAATGAAGTACCAGCAGAATCTGAAATATCGAATGTCATTAATATGAATAATATATGTCGACTTTGTGCCAATGAAAACGAAAAACTAATAGGAATATTCACTGAGGATGGCTTAACAAATGATTTGGCAAATAAGATGAATCTATATTTGCCTGTTAAAGTATCCGAATCCGACCAGTTACCCTTACAATGTTGTTGGCAATGCGCTTCAACCGTTTTAGCATGGCACGATTTGGTTGTTACAAGCGTGGAAGCCGACAGAAGACTGCGCCACTGTGATTATGTTACTTTAAAAGGGCTGGAATACGATCAAGAGGCAAACGAACCCGTTTCTGGTGATGAAAATGCCGAAGAGACTACCACCACCACCGACGTCGAGCACGTTGTGACAGAATCATTCAGTACAACTCTAAATGCCTTCTGCCAAAATGAAGACATTACACCAACATCTGATTCGTTAGAGGAAAAATTcgaaaatgaatatttaatagaaaatacaGAGGATATTAAAACAGATCCAAATGAAGTAGTTAAGGAGCAGAAATTTATTAAACCGGATGATGAAGATAAATCTGTATATAACTTTCGCTGTCAATATTGTCCAATGTTGTTTGTTGCTGAAGATGAAATTCTAAAGCATGTAAAAGACGAACACAAGAAAAATGGAACAAAGAACAAAAATTTTAGTGATAAAAAATCGAATTCAAAACGGCCACAGAACAAAATCGATCGGGAATTAGTGAATGCCGCTAAAGTAGTCGTCGATGGTCGAATCTATTACAATTGCAAACAGTGTGGCAAAAGTCTACATTCACCATATACGTACGTTTGGCATATGCGTATCCATACTGGTGAACGGCCGTTCGTTTGCGATCTATGCGGTAAACAATTTCGTGTTTCACAAGGTCTTATACGACATTTAAGGGAGACACATGAACGTATACGTAATTTTCCGTGTGATTTGTGTGGTCGGATGTTTGCGACAAAGCGTAATGTTGAAGAGCATAGAAGAATCCATACAAATGAACGGCCATATATATGTGACTTGTGTGGTAAAGCGTTTAAACAGAAAGCGTCATTATTTGTGCACAATCGTTCACATTCAGATTTGTTCCCgtttaaatgttcatattgtgcacAAGGTTTTCGCACGAAACCGCCTCTATTAATTCATATAACTAGACATACTGGAGAAAAGCCATATCCGTGTGATATATGTGGCCGATGTTTTCGCATTAAGTACGAATTGAAAAGGCATCGTCTAATACATTCCGATGAGAAGCCGTTCTCGTGCGATGAGTGTGGACTCAGTTTCCGACAAAAACGATATTTACGTAatcatttaaaattgaatCACCAATTATGTGATGGTTGA
- Protein Sequence
- MTEIELKDPSLTNEVPAESEISNVINMNNICRLCANENEKLIGIFTEDGLTNDLANKMNLYLPVKVSESDQLPLQCCWQCASTVLAWHDLVVTSVEADRRLRHCDYVTLKGLEYDQEANEPVSGDENAEETTTTTDVEHVVTESFSTTLNAFCQNEDITPTSDSLEEKFENEYLIENTEDIKTDPNEVVKEQKFIKPDDEDKSVYNFRCQYCPMLFVAEDEILKHVKDEHKKNGTKNKNFSDKKSNSKRPQNKIDRELVNAAKVVVDGRIYYNCKQCGKSLHSPYTYVWHMRIHTGERPFVCDLCGKQFRVSQGLIRHLRETHERIRNFPCDLCGRMFATKRNVEEHRRIHTNERPYICDLCGKAFKQKASLFVHNRSHSDLFPFKCSYCAQGFRTKPPLLIHITRHTGEKPYPCDICGRCFRIKYELKRHRLIHSDEKPFSCDECGLSFRQKRYLRNHLKLNHQLCDG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01345194;
- 90% Identity
- iTF_01345194;
- 80% Identity
- iTF_01345194;