Suni008686.1
Basic Information
- Insect
- Silvanus unidentatus
- Gene Symbol
- -
- Assembly
- GCA_963930825.1
- Location
- OZ005759.1:4889416-4890938[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.022 90 3.5 0.1 17 46 164 193 159 200 0.86 2 8 0.04 1.6e+02 2.7 0.0 16 45 207 236 196 243 0.79 3 8 0.071 2.9e+02 1.9 0.0 21 52 240 271 235 272 0.83 4 8 0.024 1e+02 3.4 0.1 20 45 267 292 259 301 0.73 5 8 3.6e-06 0.015 15.6 0.1 21 48 352 378 344 383 0.85 6 8 0.03 1.2e+02 3.1 0.0 18 45 377 404 375 407 0.84 7 8 9.7e-05 0.4 11.0 0.0 21 46 408 433 403 439 0.87 8 8 0.036 1.5e+02 2.8 0.3 21 44 436 459 432 463 0.87
Sequence Information
- Coding Sequence
- ATGCATTCCTGTTTAATCTGCACGAAAATAATAACTGATATAATTATTGAAATTGATGATAAAATTGAAGGAATTAAAATTAAGGATGTACTGTATGACTTAAATCACAAGTTTCCACAAGAGAAATCTGTTACAACGAAGATATGTTTCGAATGCTGTTCCAACTTGAGcgatttgtataattttagGGAAAACTGCTATGTTTGTTTTGGAATTTACGATAATCACAAAAGTTGTTTAATATGTTCACAAATCGGCTCGCACACAGTCACTTCTAGTACTGTTATTGTCAACAACAAACCAAAAACTTTTTCTGATATACTGTCCGATATGTGGTCATACGAATTTCAGCAGGTGAATGTGTCCGATGAAATTTGCACAAAATGCAGTGAACGTCTGGTATTTGCATACTCGTTTCATTTGTTATGCCGAAATGCTGTACATTATTGGACCTCCAAAGTGCTACACGATTTAGTCAAAAAACAAGACCTAAGAGATCAATCACAAAACTTTCCGAAATGTCCACGATGTCCACAAACATTTCGAGTAAAAGCTGGACTTGACTTTCATCTAGAACGAAATGCTTGCCAAAAGCGATCTTCAGGAAACAAGGGGAATTCTAAGAAGTCAAATAACGAAACCGAATTTGTGTGTGATGTATGTTCCAAGACATTCAACTCAAGCACCAAATTTAATAGGCATGTTCGAACACACAGTGGAGAGAAACCATTCAAGTGCGGCAAATGTTCGAAAACGTTTCAATTTGCATACAACTTGAAGCAACATTCAAAGATCCATTCAAGTGAAAAGCCATTTCTATGTGAGATATGTTCGAAATCCTTCAAAGTGTACAATTTATTGCAAGTACATTTGAGACGACACACAGGTGAGAAACCCTTCAAATGTGAATTATGTCCGAAGAGTTATGTGCTGAAAGTGCATTTGAAGTATCATTTAATGGGCCATACAGGCGAAAAGAATTTCCAATGTGAATATTGTTCGAAAGCCTTCATAACGAATTGTGCATTGACGAAACATATAAGGACACATACTGGTGAACAGCCGTACACTTGTGATATATGTTTGAAGAGTTTTAGTTTTAGTAGTAATTTGCATAAACATTTAAGGAGACATACGGGAGAAAAGCCACACAAGTGCGAGATTTGTTTAAAAGGTTTTGTAGATACGGGTCAATTAAAGGACCATCTTAGGGTCCATACAGGTGAAAGACCGTACAAATGTACAATTTGTTTGAAAGCGTTTAAAAAGTCGGGCAATttaaaatatcatttaagGTGGCATAGTGGTGAGAAACCATATCAGTGTGAAATTTGTTTGAAGTGTTTTACTAGACGAGATAATATGAATCAACATATTAAAAGTCATGTTAATGATACTTCAAAGtaa
- Protein Sequence
- MHSCLICTKIITDIIIEIDDKIEGIKIKDVLYDLNHKFPQEKSVTTKICFECCSNLSDLYNFRENCYVCFGIYDNHKSCLICSQIGSHTVTSSTVIVNNKPKTFSDILSDMWSYEFQQVNVSDEICTKCSERLVFAYSFHLLCRNAVHYWTSKVLHDLVKKQDLRDQSQNFPKCPRCPQTFRVKAGLDFHLERNACQKRSSGNKGNSKKSNNETEFVCDVCSKTFNSSTKFNRHVRTHSGEKPFKCGKCSKTFQFAYNLKQHSKIHSSEKPFLCEICSKSFKVYNLLQVHLRRHTGEKPFKCELCPKSYVLKVHLKYHLMGHTGEKNFQCEYCSKAFITNCALTKHIRTHTGEQPYTCDICLKSFSFSSNLHKHLRRHTGEKPHKCEICLKGFVDTGQLKDHLRVHTGERPYKCTICLKAFKKSGNLKYHLRWHSGEKPYQCEICLKCFTRRDNMNQHIKSHVNDTSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01345180;
- 90% Identity
- iTF_01345180;
- 80% Identity
- iTF_01345180;