Suni003584.1
Basic Information
- Insect
- Silvanus unidentatus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963930825.1
- Location
- OZ005757.1:26728563-26732124[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-112 2.3e-108 362.2 31.8 1 300 28 310 28 310 0.96 2 2 0.13 2.8e+03 -2.5 4.8 196 233 345 379 318 385 0.39
Sequence Information
- Coding Sequence
- ATGGACGGTATTGGTGGCAGAAGGCGATTAGCTGTAAAATCCTCTGCAGAAGATCAAGCACTTGATCAGATTGCCAAAGAGGCGGAAGCGCGTTTATGGGCAAAGAGGCAGGCCAGAGCTGAAGCCCGTGAGATACGAATGCGTGAATTGGAACGACAACAGAAAGAGCAAGAGGAAAATGCGGATAGACAGTTTGATATGTTATCCGAGCCGATAGTAAGAACGCCACGTTCCATCAGTGGAACCAGTCGCTATTTGTCCAGTCGAAGGAGTTCAGAAGATTCCCTTGAAGATGGTTGCAGTTTACGGGATCTGCGTCATGAACTCAAAGAAGTGGAGGAGAAGTTTAGGAAGGCGATGATTGCGAATGCACAATTGGATAATGATAAAGCGGCGCAAACTTATCAATTGGAATTGTTGAAGGATAGattGGAAGAATTGGAAGAAGAACATTCTCAATTACGGCGAGAGCACCGTGAAAAGTGCAGAGAACATGAACAATTAAAGCGTTTATTTACAACACTTAAAGACGATCTGGCTGTGACAAAAGCGGAATTAGATGAGCGTGATCGTTTAATAGCGGAAAAAGGTTTAGTGATTGTGGGAGAGGATTGTATAGGCGAAGAGAATGGTTTACCAAAAAAAGCATTAGTTAGTGTAGAAAATGCGCAATTGTTACAAGAGGCTGGTGATGGTAGTTTGGATGTGCGGTTAGCGAAATTTGCAAAAGAGAAAAGTGATCTGCAAGATCAAATCAGTCATTTAAAGTTAGAATTGGAAGAGGAGCGTACGAAGAGAAGAAAGTCGAGTTCGTCGACATTGAATGGTCCTAGTTCGGAGTATGATTTGGATGATATACAGAGGGAGGCGAGTAAACAGTTGGCTGATTATAAATTTCGTGCACAAAAAGCTGAACAGGATGTGGCTACATTGCAGGCCACTGTGGCACGTTTAGAGAGTCAAGTGATTCGTTATAAAACTGCAGCAGAGGTTTCGGAACAATCGGAAGAAGCGTTGAAATCGGAAAAGAGGAAATTACAAAGAGAGGCAAGAGAAGCATTAAGTCGAGCAGAGGAATTAGAAACGTCAAATACACATTTACTAAAACGATTGGATAAATTAAAGAATGCAAAGTCGGCACTATTGAAAGAACTTTGA
- Protein Sequence
- MDGIGGRRRLAVKSSAEDQALDQIAKEAEARLWAKRQARAEAREIRMRELERQQKEQEENADRQFDMLSEPIVRTPRSISGTSRYLSSRRSSEDSLEDGCSLRDLRHELKEVEEKFRKAMIANAQLDNDKAAQTYQLELLKDRLEELEEEHSQLRREHREKCREHEQLKRLFTTLKDDLAVTKAELDERDRLIAEKGLVIVGEDCIGEENGLPKKALVSVENAQLLQEAGDGSLDVRLAKFAKEKSDLQDQISHLKLELEEERTKRRKSSSSTLNGPSSEYDLDDIQREASKQLADYKFRAQKAEQDVATLQATVARLESQVIRYKTAAEVSEQSEEALKSEKRKLQREAREALSRAEELETSNTHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01121615;
- 90% Identity
- iTF_01121615;
- 80% Identity
- -