Suni005287.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Silvanus unidentatus
Gene Symbol
Paxbp1
Assembly
GCA_963930825.1
Location
OZ005758.1:2838597-2840966[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 7e-29 7.2e-25 88.3 0.2 4 272 495 701 493 703 0.92

Sequence Information

Coding Sequence
ATGTCTCTGTTTAGAAAACCGAAGAAAAACATTGTACAAAGACGTGTATTCACCGAAAATGATGATGAAGACGAGACAGAACAAATGGATTGGCAAGAATCATCGTCCACTGAAAAGAAATCTAAAAAGAAAGACAGTAAATCGCACAAACCAAAACAAACGCTACTCAGTTTCGAAACTGAGGAAGAGGGTGAAGTTTTCCAAGTGAGAAAATCATCACACAGTAAAAAGATTATGAAAATGTTTGAGAAAGAGCGTCATAGAAAAAAAGAAGTGAAAGTGGAGAAGGAAGAGATCAAACAGAAAGACAACAAAACAGAAATCGTAACAGACGACTTGGTGTTGGTGGTAAATTCAAGTCACAAGAAACCACCCACACCACCGCCACCAATACTCAGTGGACGTGATGCTTTATGTGCTGGAAAGGACGATTTATCCTCTGAGGAGGAAGAAACTCCTTCCAGTCATCGTTTCTCTCGTCCTGAAAATTTCAAGAAAGTTTTAGAGTCTGGCGCTATTCCAGACGCTGCAATGATCCACGCCGCAAGAAAGAAACGACAACGTGCTAGAGAAATGGGCGACTACATCCCTGTAGAGGAAGAGGAGCCCGAAGACACCGGCAGACTGTTAAGAGAGGACGACAATGAAGGCAGCGACGAGGAGCGAATCGACATGGACGTAAATTTGGCTTTAAGAGACCAGGAGAGGAGACGCGAACAATTCTTAGCTGCTCAAGAGTCTGATCATGAAGTCGACGAATGGGAGGACCAGCAAATTCGAAAAGGCGTCACAgGAGCTGCAGTTTCTATGGCCCAAGAGCTCCTCTATACCGAATACCCCAGTGAACCAGCACCAAAACCGGCAATAGACCCCGGAGTGCCACGGACGCCTGACATGATCGCCTCCAAACTGCGCGAACACTATCAAAGTGTGTGCGAATCGCGCGATCAAAACCTCCGAAAATTAGACAACATCCAATCAGACATCCAAGAAACAGCGAAAGAGTTAGAGGAGCTTAAAATCAAGGCACCCATCGCTGCGGAACGTTTCAAATTCTATCAAGAATTGCGCGGTTACATGACCGATTTGGTTGAATGTTTGGACGAGAAAGTGGGCATTATTGCCAGTTTAGAGCAACGTGCAATGGACTTGTTAGCGAGAAAGTCGGAATGGTTGATTGAACGACGTCGACAGGATGTAAGGGACCAAGCGGAGGAAGCGACCAACAAGGCAGGACCATTAAAGAAGGGCCCGGAAGAGGAGGAGAAAGTGCGACGAGCGGCAGAACGTGAGGGACGACGTACACGAAGACGTCGAGCGAGAGAAGCGCCTGGACAACCGAAACATGTTGAAGGAATGTCGAGTGACGATGAAATCTCCCAACAAGACATTCTCAATTTCGATAAAGAAAGGGAACAGATCGAGACGGAAGTGCAGGAAGTGTTTGTGGATGTGGTGGAGGATTATTCGTCAGCGgcgaatattttaataaaatttgaacAGTGGAGAGAAACGGATTTGACGGCGTATGGGGAAGCGTATGCAACGTTATGTCTACCGAAGGTGATCAGTCCATTAGTGAGGCTGAATTTGATATTCTGGGATCCGTTGAATGAGAGTGTGGAGTTGGAGAAGTTGGATTGGTATCGAACGTTGGCATTGTATGGATTGCATGATGATGAGACGGAGGCGACATTGGCCAAAGATCCGGATATTAATTTGTTACCGACGATTATAGAGAAGGGAATTGTGCCGAAGTTGACACAGTTGGTGGATAGGTGTTGGGATCCATTGTCCAGTTCGCAAACGTTACGGTTGGTGGGGACTGTAAGTCGGTATATAAGACGATTTCCGACTTTGGGACCAGCAAGTATACAgctgaataatttatttaatgccgttttacataaaatgaagaCATCGTTGGAGCATGATGTGTTTATACCGATAACACCGAAATTGGCCGAAAGTAAATCGCCGTTTTTCCAAAGACAATTTGCGAGTGGTTTGAAATTGCTGAAGAATATTACAAGTTGGCAGGGAATTATAAATGATAATATTTTAAAGGAATTGGCATTAACGTCGTTATTGAATCGATATTTATTGAGTGCTATTAAGTTTTGTTTATTGACGGATGCTGTGCagaaaattaaattgattaGTCTTATCTTACCACGGGTTTGGTTGCAGTCCAATACGAGTGAGTTGAAAATGTTGTTGACCACGTCATTGAATTTACACCAGCAGTTAGATAGGAATAATCCATTGTATTTGGAATCTATTGAGACGATAGATACAATCATTAAGACTTTAAGATCGTAA
Protein Sequence
MSLFRKPKKNIVQRRVFTENDDEDETEQMDWQESSSTEKKSKKKDSKSHKPKQTLLSFETEEEGEVFQVRKSSHSKKIMKMFEKERHRKKEVKVEKEEIKQKDNKTEIVTDDLVLVVNSSHKKPPTPPPPILSGRDALCAGKDDLSSEEEETPSSHRFSRPENFKKVLESGAIPDAAMIHAARKKRQRAREMGDYIPVEEEEPEDTGRLLREDDNEGSDEERIDMDVNLALRDQERRREQFLAAQESDHEVDEWEDQQIRKGVTGAAVSMAQELLYTEYPSEPAPKPAIDPGVPRTPDMIASKLREHYQSVCESRDQNLRKLDNIQSDIQETAKELEELKIKAPIAAERFKFYQELRGYMTDLVECLDEKVGIIASLEQRAMDLLARKSEWLIERRRQDVRDQAEEATNKAGPLKKGPEEEEKVRRAAEREGRRTRRRRAREAPGQPKHVEGMSSDDEISQQDILNFDKEREQIETEVQEVFVDVVEDYSSAANILIKFEQWRETDLTAYGEAYATLCLPKVISPLVRLNLIFWDPLNESVELEKLDWYRTLALYGLHDDETEATLAKDPDINLLPTIIEKGIVPKLTQLVDRCWDPLSSSQTLRLVGTVSRYIRRFPTLGPASIQLNNLFNAVLHKMKTSLEHDVFIPITPKLAESKSPFFQRQFASGLKLLKNITSWQGIINDNILKELALTSLLNRYLLSAIKFCLLTDAVQKIKLISLILPRVWLQSNTSELKMLLTTSLNLHQQLDRNNPLYLESIETIDTIIKTLRS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01163138;
90% Identity
-
80% Identity
-