Suni003914.2
Basic Information
- Insect
- Silvanus unidentatus
- Gene Symbol
- Rfx2
- Assembly
- GCA_963930825.1
- Location
- OZ005757.1:28857891-28862627[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-37 1.4e-33 115.5 0.1 3 78 285 360 283 361 0.97 2 2 3 2.1e+04 -3.7 0.0 15 27 489 501 485 530 0.66
Sequence Information
- Coding Sequence
- ATGGCAACAACAGCTCGTTTTGCAGCAGCACAAGTCGCAGCAGCAGCGGCAGCGGCCGCTTCAACAGCACCAACAGCAGCAGGAGGTGGcggtggtggcggtggtggtaCAGCAGCAAGCAGTGGCAACAGCAATCCTCCCACTCCTGCTCCAGCCACTTCTCCTCCAGCTCAAGCTCAGACTACGCAACTGATTGTACTCCCTGCTAGTCTGCATCAGTCAGGTACAAGTGGTACGTTGGTGAATGGTGTGCCAGTGATTGATGTGTCTGCTTTGGAACAAGCAGCTGAATCCAGTAACGAAAGCACTGCAACCGCTGAACAACAAAGTGATAGCCACGAAACGGATCCGATTTCGCATAGTTCACCACATTTTATTACAGTTACAGAAGCTGCAGCTAGATCGTACGCTTCTTTAACACCAGTACAGCCTGCAGTAGTTGCAGAAGGTGACACTGTGGCTTCACATCAAGGATACATTCAATATGTTGAGCCGGAAATATACGCATCTCAGACAAATGGTGCCCAAGCACAAATGGCCTATCCGGTATACACCGTTGGTGAATCGGGCACTTTGTATTCCGCTGGTCAGGGCCAATATTATGCGGCAACAAATACTGGCACGACAGCAGTGAGTGGTGCTGTTGCATACAGTACCACTGGGGCCCATTATGTTGTGCAACAAACTGTGGAAGCAGATCCATTGATCTCGTCCACAAGAAACTCACCGCAGACTACAAATGCGGAGACAAATTATGTGGCCACGGCCACTGTGCATGCAACACAAAGTTCTGGACAAGTATCTAGTGAAGATGTTGGATCGGGTTTAGGACATGTAACAAGAGTATCTCCTGCTACTGTCCAATGGTTACTGGAAAATTATGAAACGGCTGAAGGTGTCTCATTGCCGCGGTCCACATTGTATGCACATTATTTGTATCATTGTGCTGAGAATAAATTGGAACCCGTGAATGCGGCCTCGTTTGGTAAATTGATACGGTCCGTTTTTCTTGGTTTGCGCACCCGACGGCTTGGGACTAGAGGCAACTCGAAATACCATTACTATGGTATTAGAGTGAAGCCAACGTCTTCATTAGTAAATATGGAAGATTATAGCAGTAAAGTGGTTTTAACATCGAATTCGTCTGGTAAAGCGCAAGGTACAGTGCGACCAATCAAACGTAGTTCGGATTCAAGTGATCCAACACTGTCTGTAAGTGTTTTATCACAGCATATTTCGTATTTGGGGGATGGTAGTAATGCAATACCGCCATTTCCTGATATACAATTTGCTGAACCATTGCCAGACCATTGTGGTTTCGATGATGTGGACACGTTAAAATCGATTTATCGAGAACATTTGGAAGCGTTTTTAGATGCAATATTGAGTTTAGAATTTGGTACTATTGAATCGTTGTGGCGTGAATTTTGGAGATcacaatataataataatggtgACGAATGTGAGGAGGAGAAATATTTACCTAAAGCGAAATTATACAGTTTATGTAATACGGAGCCAGTGCAACAATTTATGCGGCACGTTGACTTAATTTtctttcaaaatttaatacaaGTTTTAGTGCCTGACGTACTCAAGCCGATACCAGCTACATTAACGCAATCGATTAGAAATTTCGCAAAAAatTTGGAGAATTGGCTCTCGAATGCAATGCTTGGCGCCCCAACTGATAtgataacaataaaattaacagCTGTTTCAGCATTCAGTTCTAGTCTACGTCGTTATACGTCTTTAAATCATTTAGCACAGGCTGCACGCGCTGTCTTACATAACAGTACACAAATAGCACAAATGTTAACCGATTTGAATCGTGTGGATTTTCATAGTGTACGCGAACAAGCATCGTGGGTGTGCCAATGTGACAATGATATTGTGGCACGTTTTGAGAACGATTTTAAATTGACATTACAACAACAGAATTCATTGGAACAATGGGCTTCGTGGTTGAAGAATGTTGTAAAAAATGCATTGAAACCGTATGAAGGGAAACCGAGTTTTTCGAAAGCTGCCAGACAGTTTTTATTAAAGTGGAGCTTTTAtagTTCAATGGTTATAAGAGATTTGACATTGCGTTCAGCTGCTAGTTTTGGATCGTTCCATTTGATCCGTTTATTATATGATGaatatatgttttatttaattgaacaTCAAGTAGCTGAAGCGACAGGTGTTGTTCCGATTGCTGTTATCTTGGAAGGAATCAAACAGGACATTATGCAAAATAATTTAAGTATTTATGGTAATAATGATGGTCATTGCAATGGTAATGTGTCGCAGAACAATAAATTGGGTCGTATTAGTCCAACGGAAAATCTAACAAAACGTCAAAAAATTAGCTAG
- Protein Sequence
- MATTARFAAAQVAAAAAAAASTAPTAAGGGGGGGGGTAASSGNSNPPTPAPATSPPAQAQTTQLIVLPASLHQSGTSGTLVNGVPVIDVSALEQAAESSNESTATAEQQSDSHETDPISHSSPHFITVTEAAARSYASLTPVQPAVVAEGDTVASHQGYIQYVEPEIYASQTNGAQAQMAYPVYTVGESGTLYSAGQGQYYAATNTGTTAVSGAVAYSTTGAHYVVQQTVEADPLISSTRNSPQTTNAETNYVATATVHATQSSGQVSSEDVGSGLGHVTRVSPATVQWLLENYETAEGVSLPRSTLYAHYLYHCAENKLEPVNAASFGKLIRSVFLGLRTRRLGTRGNSKYHYYGIRVKPTSSLVNMEDYSSKVVLTSNSSGKAQGTVRPIKRSSDSSDPTLSVSVLSQHISYLGDGSNAIPPFPDIQFAEPLPDHCGFDDVDTLKSIYREHLEAFLDAILSLEFGTIESLWREFWRSQYNNNGDECEEEKYLPKAKLYSLCNTEPVQQFMRHVDLIFFQNLIQVLVPDVLKPIPATLTQSIRNFAKNLENWLSNAMLGAPTDMITIKLTAVSAFSSSLRRYTSLNHLAQAARAVLHNSTQIAQMLTDLNRVDFHSVREQASWVCQCDNDIVARFENDFKLTLQQQNSLEQWASWLKNVVKNALKPYEGKPSFSKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAEATGVVPIAVILEGIKQDIMQNNLSIYGNNDGHCNGNVSQNNKLGRISPTENLTKRQKIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01368756;
- 90% Identity
- iTF_01121319;
- 80% Identity
- -