Slut005338.1
Basic Information
- Insect
- Sialis lutaria
- Gene Symbol
- -
- Assembly
- GCA_949319165.1
- Location
- OX439234.1:16243994-16246373[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 8.5e-06 0.00046 20.7 0.4 2 23 169 190 168 190 0.97 2 12 2.2e-05 0.0012 19.4 2.8 1 23 198 220 198 220 0.98 3 12 0.00041 0.022 15.4 0.8 1 23 226 248 226 248 0.99 4 12 0.28 15 6.5 0.7 2 23 254 275 253 275 0.90 5 12 5.1e-05 0.0027 18.3 4.7 3 23 284 304 282 304 0.95 6 12 0.0011 0.061 14.0 0.1 2 23 311 333 310 333 0.95 7 12 0.053 2.9 8.8 0.2 2 23 342 360 342 360 0.92 8 12 0.0012 0.065 14.0 0.0 1 23 366 389 366 389 0.95 9 12 0.0017 0.092 13.5 0.7 2 23 400 421 399 421 0.94 10 12 4.9e-05 0.0026 18.3 1.3 1 23 427 449 427 449 0.98 11 12 0.0026 0.14 12.9 3.2 1 23 455 477 455 477 0.98 12 12 1.3e-07 6.9e-06 26.5 0.2 1 23 483 505 483 505 0.98
Sequence Information
- Coding Sequence
- atgaatgTGTCTATATCAAAATCTGATTTTTCTACCATTTGCCGTATTTGTTTATATCAAAAAAGAAATATGTCaatcattaatttaaatataagtcAATTAATACACGattgtttaaatataaagATAACTAATGGTAATGGTTTACCAGAATCAATATGTGATAAttgtaatgaaaaattacatcaattttACGATTTTAAACAACAGTGTGAAAAAGCAACTAATTTATTATATGAAGTTGCTGCTTCTGAAAACGATGAAAATAATTCTGTAAATAATAACTGTgatcaaaataatttacatagtgATGTGGAATCAATTGGTTGTATAAGTGAAACAGTTGATTCTGATAATGACAGCGAAATAGTAGATGACCCTTCAAATGGAATTGTTAGGGCGAACAGAACAGAACTCAATGATGATGATAATGAAACACCCAATGCAAGAAGAGTGAAAAAAGCTCTGCGACTCGGACCAGATAAATGTGACCTAACAACACTTACCTGTCGGATTTGTAACAAAGtacttgtaaataaatattcattagcTAGACATATGGAAACTCATGAAACAGATCGGCAATTTAGTCATACTTGTGGGGTATGCGGAAagGGATTTTATGAACGCGGACATCTAACAAAGCATGCAAGAAGACATCGTGGTGAAACCCGCTATACGTGTGAAGTATGTTGTAAACCGTTTTATGAGTTAAGTGCATTAGCTGTACATATGCGTCGTCACAAACCCGAGCCACTGACCTGTTCAACATGTAACAAGAAATTCCTTGTGCGATTACAGTTGGAAATGCATGAGAAAGCTCATGAACAAGCACAAAAAGGACATTTGTGTTCTCAATGtggTAAAACATTTCGTCAACTACATAGACTGCGTGCCCACATGTTATCTCATTCTGAGAGACGTGCTTGGCCTTGTTTAAGGTGTGACAAAGCATTCAAAGCAGAAGCAGCACTACGCAGCCACGTACGTCGCATACATGGGTCTGTTCCTCCTCGTCGCAATGTTTGTCCGATTTGTGGCAAGGCTGTTGCGCATTTACGTGCTCACTTGCTGCGTCACGCTTCTCCTAATGCTTTCACATGTTCTGCGTGTCCTCGAGCATTTCCTACGGCCGCACTTTTAGCAGCGCACGAACGTGCTAGACATGGAACTACGCCTCAGGCTCCACCGCGGTTTCTGTGTGCTAGTTGTGGACAACCGTGTAGATCGAGGGCGGAATTGAGGGTCCATGCACGAAAACACACCGATGAAAGACCATATGCATGTAGGTTGTGtgataagaaatataaaacagCTAATGGGCTAACAACGCATACAAGATCTCATACAGGAGAGAGACCGTTTATATGTTCAGTGTGTTTCAAAGGTTTCTACACGAGTCAGATTCTGAAACATCATTTGAGAACACATACAGGTGAGAGACCATATGTTTGCCAACTGTGCGGAAGAGCTTTTACTCAGAGTTCTGCGTTGAGAACTCATATGTCTATTCATTGA
- Protein Sequence
- MNVSISKSDFSTICRICLYQKRNMSIINLNISQLIHDCLNIKITNGNGLPESICDNCNEKLHQFYDFKQQCEKATNLLYEVAASENDENNSVNNNCDQNNLHSDVESIGCISETVDSDNDSEIVDDPSNGIVRANRTELNDDDNETPNARRVKKALRLGPDKCDLTTLTCRICNKVLVNKYSLARHMETHETDRQFSHTCGVCGKGFYERGHLTKHARRHRGETRYTCEVCCKPFYELSALAVHMRRHKPEPLTCSTCNKKFLVRLQLEMHEKAHEQAQKGHLCSQCGKTFRQLHRLRAHMLSHSERRAWPCLRCDKAFKAEAALRSHVRRIHGSVPPRRNVCPICGKAVAHLRAHLLRHASPNAFTCSACPRAFPTAALLAAHERARHGTTPQAPPRFLCASCGQPCRSRAELRVHARKHTDERPYACRLCDKKYKTANGLTTHTRSHTGERPFICSVCFKGFYTSQILKHHLRTHTGERPYVCQLCGRAFTQSSALRTHMSIH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01343336;
- 90% Identity
- iTF_01343336;
- 80% Identity
- -