Sful007878.1
Basic Information
- Insect
- Sialis fuliginosa
- Gene Symbol
- -
- Assembly
- GCA_961205875.1
- Location
- OY540813.1:19628582-19631321[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 8e-06 0.00043 20.7 0.4 2 23 168 189 167 189 0.97 2 12 2.1e-05 0.0011 19.4 2.8 1 23 197 219 197 219 0.98 3 12 0.00038 0.021 15.4 0.8 1 23 225 247 225 247 0.99 4 12 0.2 11 6.8 0.7 2 23 253 274 252 274 0.90 5 12 1.6e-05 0.00085 19.8 4.9 1 23 281 303 281 303 0.97 6 12 0.001 0.056 14.0 0.1 2 23 310 332 309 332 0.95 7 12 0.05 2.7 8.8 0.2 2 23 341 359 341 359 0.92 8 12 0.00089 0.048 14.3 0.0 1 23 365 388 365 388 0.94 9 12 0.0016 0.085 13.5 0.7 2 23 399 420 398 420 0.94 10 12 4.5e-05 0.0024 18.3 1.3 1 23 426 448 426 448 0.98 11 12 0.0017 0.093 13.4 3.1 1 23 454 476 454 476 0.98 12 12 1.2e-07 6.4e-06 26.5 0.2 1 23 482 504 482 504 0.98
Sequence Information
- Coding Sequence
- atgaaTGTATCTATTTCAAAATCTGATTTCTCTACCATTTGCCGTATTTGTTTATACcaaaaaagaaatatgtttatcatcaatttaaatataagtcAACTATTACATGACTGCTTAAATATAAAgATCATTAATGGTGATGGCTTACCAGAATCAATATGTGAtaattgtaatgaaaaattaCATCAATTTTACGAATTTAAACAACAGTGTGAAAAAGCAACCGATTTATTATATGAAGTTGCTACTGCTGAAAACGATGAAAATAATTCTGTAAATAATAACTGtgatcaaaataatttacatagtgaTGTGGAGTCAACTGGTTGTATAAGTGAAAAAGTTGATTCTGATGACAGCGAAATAGTAAATGACCCTGCAAGTGAAATTGTTAGAGCGAACAGAACGGAAGTCAATGATGAAGATAGTGAAACACCCAATGCAAGAAGAGTAAAAAAAGCTCTACGACTCGGACCAGAAAAATGTGACCTAACAACTCTTACCTGTCGGATATGTAACAAAGtacttgtaaataaatattcattagcTAGACATATGGAAACTCATGAAACAGATCGGCAATTTAGTCATACTTGTGGCGTATGCGGGAAGGGATTTTATGAACGTGGACATCTAACAAAGCATGCAAGAAGACATCGTGGTGAAACCCGCTATACATGTGAAGTGTGTTGTAAACCGTTCTACGAGTTAAGTGCATTAGCTGTACACATGCGTCGTCACAAACCTGAGCCACTGACTTGTTCAACATGTAAAAAGACATTCCTTGTGCGATTACAATTGGAAATGCATGAGAAAGCTCATGAACAAGCACAGAAAGGACATTCTTGTTCTCAGTGTGgTAAGACATTTCGTCAACTGCACAGATTGCGTGCCCACATGTTATCTCATTCTGAGAGACGTGCATGGCCTTGTTTAAGGTGTGATAAAGCATTCAAAGCAGAAGCAGCACTACGTAGTCATGTACGTCGCATACACGGGTCTGTTCCTCCTCGTCGCAATGTTTGTCCGATTTGCGGCAAGGCTGTCGCGCATTTACGTGCTCACTTGCTGCGTCACGCTTCTCCTAATGCTTTTGCTTGTCCTGCATGTCCTCGAGCGTTTCCTACGAGCGCACTTTTAGCAGCGCACGAACGTGCAAGGCATGGATCTACGCCTCAGGCTCCACCGCGGTTTCTGTGTGCTAGTTGCGGACAACCGTGTAGATCGAGGGCGGAATTGAGGGTCCATGCACGAAAACACACCGATGAGAGACCGTATGCATGTAGGTTGTGcgataagaaatataaaacagCTAATGGGCTGACAACGCATACGAGATCTCATACGGGAGAGAGACCATATATATGTTCAGTGTGTTTTAAAGGTTTCTACACGAGTCAGATTCTGAAACATCATTTGAGAACACATACAGGTGAGAGACCATATGTTTGCCAATTGTGTGGAAGAGCTTTTACTCAGAGTTCTGCGTTGAGAACTCATATGTCTATTCATTGA
- Protein Sequence
- MNVSISKSDFSTICRICLYQKRNMFIINLNISQLLHDCLNIKIINGDGLPESICDNCNEKLHQFYEFKQQCEKATDLLYEVATAENDENNSVNNNCDQNNLHSDVESTGCISEKVDSDDSEIVNDPASEIVRANRTEVNDEDSETPNARRVKKALRLGPEKCDLTTLTCRICNKVLVNKYSLARHMETHETDRQFSHTCGVCGKGFYERGHLTKHARRHRGETRYTCEVCCKPFYELSALAVHMRRHKPEPLTCSTCKKTFLVRLQLEMHEKAHEQAQKGHSCSQCGKTFRQLHRLRAHMLSHSERRAWPCLRCDKAFKAEAALRSHVRRIHGSVPPRRNVCPICGKAVAHLRAHLLRHASPNAFACPACPRAFPTSALLAAHERARHGSTPQAPPRFLCASCGQPCRSRAELRVHARKHTDERPYACRLCDKKYKTANGLTTHTRSHTGERPYICSVCFKGFYTSQILKHHLRTHTGERPYVCQLCGRAFTQSSALRTHMSIH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01344273;
- 90% Identity
- iTF_01344273;
- 80% Identity
- -