Slut002167.1
Basic Information
- Insect
- Sialis lutaria
- Gene Symbol
- -
- Assembly
- GCA_949319165.1
- Location
- OX439232.1:10538877-10542211[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9.6e-06 0.00052 20.5 3.8 1 23 115 137 115 137 0.96 2 13 0.077 4.2 8.3 2.8 3 23 142 163 141 163 0.95 3 13 0.00049 0.026 15.2 3.4 2 23 172 194 171 194 0.95 4 13 0.0033 0.18 12.6 0.6 1 23 199 221 199 221 0.94 5 13 2e-06 0.00011 22.7 1.7 1 23 224 246 224 246 0.98 6 13 0.36 20 6.1 0.4 1 23 249 272 249 272 0.90 7 13 0.0003 0.016 15.9 0.7 2 23 282 303 281 303 0.96 8 13 0.1 5.6 7.9 0.3 3 22 309 328 307 331 0.86 9 13 0.0003 0.016 15.8 0.4 1 23 340 363 340 363 0.96 10 13 1.4e-05 0.00076 20.0 3.8 1 23 370 392 370 392 0.97 11 13 0.0013 0.07 13.8 2.5 1 23 399 422 399 422 0.92 12 13 7.2e-08 3.9e-06 27.2 1.6 1 23 428 450 428 450 0.98 13 13 6.6e-07 3.6e-05 24.2 3.3 1 23 456 478 456 478 0.97
Sequence Information
- Coding Sequence
- ATGAGAATCAAAGTTGATTATAGTACAAATTCTTACAtcgaaaacataaatattttagataattcaATCTCAgataaatttgtgaaaaatatttcaaatatcagAAATGAGATCGGTGATGATAATATACATCAACCAAGAacttctaataataatgaatCAAATGATATCGAAGTATCATTATTAACAGATGTAGatactaaaaatgtaaatagcATTATAAATGACAACGCAGCAACAAATGAACATAGTTTACCCAAACAGACCTATGAAACGGATGAAGCTAAACTGtctgaaattaatgaaattggccaatgtgatttaaaattaaatgtacctCGTTATAAATGTGATGAATGTGGGAAACATTTTAATAACCGTAGTTATTATCAAAAACATACGGAAGGACATAAATCAAATAATTGCACTCATTGTGCTGCTAAGTTTGcaattagaaaaaatttaatgaatcaTATGTTGCATgaacataaaattaaagataCGGCCTATTTGCAGTGCCCACACTGTGACCACCGTTTTGTGAAACGAAGAAACTTATATATTCACTTGGCAAAAAACCACGCAAAAGGAAAACATACTTGTGTTGAATGTGGAAAGATATTTGATAGTTTGAAAGAATATGAGGAACATTCTACTATACATAAGCAGTTTGAATGCCCAAAATGTAATGAAAACTTTTCTCGAAAGCAGCAATATGAAATTCATATGAAGCGACATGATAAATATGAATGTGTAACGTGTAATTTAACGTTTGCTTCACTGAAAAGGATTTTAGAACATAAAAAACAAGGTCATGATATAAAGGGTTTAGATCCATCTTTGACTTGTGTGTATTGTCGTATTATATTTAGTAAACCTTCTGCAATGAAAAAACATATGACTAGGCACActgtgAGAATATCTTGCAGCCCGTGTAACAGAAGTTTCTCAAATGATCGGTCCTACAAATTACACTTGCTGAGTGCAGCGCATGAGGAAAAAATCACAAGTGGTGGTTTTATCTGCAGCATATGCGGTGCACATTTTGTAAAGAAGGCAATGCTGATTCAGCATTTGACCAGAATCCACAGACAAGCTCATATACAATACAAATGTAAACTGTGTGATTGTCGATTCACTACCAAAACTAACTTGGAGCGGCATGAGGAGATACATTCCAGAATAGAAAAAGAGTTCATTTGCGATCAGTGCGGGaagatttgttttaattttgatagtttGAAACGTCATCAAGAGTTTGTTCATAAAGAGgAAGCTAAATTTGAATGCAATATTTGCGGCaagaaatttaaaagaaacagtGAACTATCACGTCACTTAACATCACATTCAGAAAATCGCCCGTTCATCTGTTCTTACTGCGGCCAATCCTATAAACGAAATACACATCTAAAACGTCATATACAGATACACACAAAATCAAAAGAAGAAAACAATACAAGAAAGAAAAACACcgcacctaaaaaaaataaacgaaaaaatGTTATCGAACAGCAAATTATAGATAACAATCTGATAGAACCGATTTATCACCTGCCCGAAGAAAACACAACAGAATTAGTAACGTTAGCTATTTCTGACGTTCAAGATATCGTCATCTCGAAAAATTTACCgagtaactttaatttattagATGGGCAGTTTGCATCAGATTTGCTTCAACCTTTAGAGATTCCATTCCAGGAATTATGGTCGGATAAAAATCTATCTCCATTACCTGATGATTATATCAATGCTTGTCAAATGCAATcattaaatgattttaatttgaaGAATGATATTGGTGATAATATACAAGAATCATTTACTATCTGTCAAATTCCGGATAATATTCTAAACCAATCTGCAGGTATTCAGTTAGATCATATTGATACTGCTGATTTGATTGTCTTACCATCAGATATAAATGTAGACCTAAGTCAAGTAATTCAAGTTCAAGAAGGTCTTTCTTTGCCAGATTATTTGTAG
- Protein Sequence
- MRIKVDYSTNSYIENINILDNSISDKFVKNISNIRNEIGDDNIHQPRTSNNNESNDIEVSLLTDVDTKNVNSIINDNAATNEHSLPKQTYETDEAKLSEINEIGQCDLKLNVPRYKCDECGKHFNNRSYYQKHTEGHKSNNCTHCAAKFAIRKNLMNHMLHEHKIKDTAYLQCPHCDHRFVKRRNLYIHLAKNHAKGKHTCVECGKIFDSLKEYEEHSTIHKQFECPKCNENFSRKQQYEIHMKRHDKYECVTCNLTFASLKRILEHKKQGHDIKGLDPSLTCVYCRIIFSKPSAMKKHMTRHTVRISCSPCNRSFSNDRSYKLHLLSAAHEEKITSGGFICSICGAHFVKKAMLIQHLTRIHRQAHIQYKCKLCDCRFTTKTNLERHEEIHSRIEKEFICDQCGKICFNFDSLKRHQEFVHKEEAKFECNICGKKFKRNSELSRHLTSHSENRPFICSYCGQSYKRNTHLKRHIQIHTKSKEENNTRKKNTAPKKNKRKNVIEQQIIDNNLIEPIYHLPEENTTELVTLAISDVQDIVISKNLPSNFNLLDGQFASDLLQPLEIPFQELWSDKNLSPLPDDYINACQMQSLNDFNLKNDIGDNIQESFTICQIPDNILNQSAGIQLDHIDTADLIVLPSDINVDLSQVIQVQEGLSLPDYL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01343326;
- 90% Identity
- iTF_01343326;
- 80% Identity
- -