Sful005215.1
Basic Information
- Insect
- Sialis fuliginosa
- Gene Symbol
- -
- Assembly
- GCA_961205875.1
- Location
- OY540811.1:35699890-35704180[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9e-06 0.00049 20.5 3.8 1 23 116 138 116 138 0.96 2 13 0.026 1.4 9.7 5.1 3 23 143 164 142 164 0.95 3 13 0.00046 0.025 15.2 3.4 2 23 173 195 172 195 0.95 4 13 0.0031 0.17 12.6 0.6 1 23 200 222 200 222 0.94 5 13 1.9e-06 0.0001 22.7 1.7 1 23 225 247 225 247 0.98 6 13 0.91 49 4.8 0.4 1 23 250 273 250 273 0.90 7 13 0.00028 0.015 15.9 0.7 2 23 283 304 282 304 0.96 8 13 0.07 3.8 8.3 0.3 2 22 309 329 308 332 0.87 9 13 0.00016 0.0085 16.6 0.4 1 23 341 364 341 364 0.96 10 13 1.3e-05 0.00071 20.0 3.8 1 23 371 393 371 393 0.97 11 13 0.0012 0.065 13.8 2.5 1 23 400 423 400 423 0.92 12 13 6.8e-08 3.6e-06 27.2 1.6 1 23 429 451 429 451 0.98 13 13 6.2e-07 3.4e-05 24.2 3.3 1 23 457 479 457 479 0.97
Sequence Information
- Coding Sequence
- ATGAGAATCAAAGTTGATTATAATAGTACAAATTCTTACAtcgaaaacataaatattttagataattcaATCTCAGATAAATTTGTGAAAAATGTTCCAAATATCAAAAATGAGGTCGGTGATGATAATATACATCAACCAAAAACTTCTAATAATAATGAATCGAATGATATTGAAGTATCATTATTAACAGATATAGATACTAAAAATGTCGATGGTTTGATAAATGACAGCATAGAAACGAGTGAACATAGTTTACCCAAACAGACTCATGAAACGGATGAAACTAAACTGTctgaaattaatgaaattggccaatgtgatttaaaattaaatgtacctcGTTATAAATGTGATGAATGtggaaaacattttaataaccgtagttattatcaaaaacataCAGAAGGACATAAGTCAAATAATTGCACTCATTGTGACGCTAAGTTTGCAATTAGAAAACATTTAATGAACCATATGTTGcatgaacataaaattaaagatacaGCCTATTTGCAGTGCCCGCACTGTGACCACCGTTTTGTGAAACGAAGAAACTTATATATTCACTTAGCAAAAAACCATGCAAAAGGAAAACATACTTGTGTTGAATGTGGAAAGATATTTGATAGTTTGAAAGAATATGAGGAACATTCTACTATACATAAGCAGTTTGAGTGTccaaaatgtaatgaaaattttTCTCGAAAACAGCAATATGAAATTCATATGAAGCGACATGATAAATATGAATGTGTAACGTGTAGTTTAACGTTTGCTTCACTGAAAAGAATTTTAGAACATAAAAAACAAGGTCATGACATAAAGGGCTTAGATCCAtctttgacttgtgtgtattgtCGTATTATATTTAGTAAACCTTCTGCTATGAAAAAACATATGACTAGACACActGTGAGAATATCTTGCAACCCATGTAACAGAAGTTTCTCAAATGATCGGTCCTACAAATTACACTTACTGAGTGCTGCGCATGAGGAAAACATCACGAGTGGTGGTTTTGTCTGCAGCATATGCGGTGCACATTTTGTAAAGAAGGCAATGCTGATTCAGCATTTGACCAGAATCCACAGGCAAGCTCATATACAATACAAATGTAAACTGTGTGATTGTCGGTTCACTACCAAAACTAACTTGGAGCGGCATGAGGAGATACATTCCAGAATAGAGAAAGAGTTCATTTGCGATCAATGCGGGaagatttgttttaattttgatagtttGAAAAGGCATCAGGAGTTTGTTCATAAAGagGAAGCTAAATTTGAGTGCAATATTTGCGGTAAGAAATTTAAACGAAACAGTGAACTGTCACGTCACTTGACATCACATTCAGAAAATCGCCCGTTCATCTGTTCTTACTGTGGTCAATCCTACAAACGAAACACACATCTAAAACGTCACATACAGATACACACAAAATCAAAAGAAGAAAACGCTACAAGAAAGAAAAATACAGCACCTAAAAAAAGTAAACGAAAAAATGTTATCGAACAGCAAGTTATAGATAACAATCTGATAGAACCGATTTATCACCTGCCCGAAGAAAATACAACAGAATTAGTAACGTTAGCTATTTCTGACGTTCAAGATATCGTCATCTCGAAAAACTTATCGAATAACTTTAATTTATTAGACGGGCAGTTTGCATCGGATTTGCTTCAACCTTTAGAGATTCCATTCCAGGAATTATGGTCGGATAAAAATCTACCTCCGTTACCTGATGATTATATCAATGCTTGTCAAATGCAGTCgttaaatgattttaatttaaagaacGATATCGGTGATAATATGCAAGAATCATTTACTATCTGTCAAATTCCCGATAATATTCTAAACCAATCTGTTGGTATTCAGTTAGATCATATTGATACTGCTGATTTGATTGTTTTACCATCAGATATAAATGTAGACCTAAGTCAAGTAATTCAAGTTCAAGAAGGTCTTTCTTTACCAGATTATTTGTAG
- Protein Sequence
- MRIKVDYNSTNSYIENINILDNSISDKFVKNVPNIKNEVGDDNIHQPKTSNNNESNDIEVSLLTDIDTKNVDGLINDSIETSEHSLPKQTHETDETKLSEINEIGQCDLKLNVPRYKCDECGKHFNNRSYYQKHTEGHKSNNCTHCDAKFAIRKHLMNHMLHEHKIKDTAYLQCPHCDHRFVKRRNLYIHLAKNHAKGKHTCVECGKIFDSLKEYEEHSTIHKQFECPKCNENFSRKQQYEIHMKRHDKYECVTCSLTFASLKRILEHKKQGHDIKGLDPSLTCVYCRIIFSKPSAMKKHMTRHTVRISCNPCNRSFSNDRSYKLHLLSAAHEENITSGGFVCSICGAHFVKKAMLIQHLTRIHRQAHIQYKCKLCDCRFTTKTNLERHEEIHSRIEKEFICDQCGKICFNFDSLKRHQEFVHKEEAKFECNICGKKFKRNSELSRHLTSHSENRPFICSYCGQSYKRNTHLKRHIQIHTKSKEENATRKKNTAPKKSKRKNVIEQQVIDNNLIEPIYHLPEENTTELVTLAISDVQDIVISKNLSNNFNLLDGQFASDLLQPLEIPFQELWSDKNLPPLPDDYINACQMQSLNDFNLKNDIGDNMQESFTICQIPDNILNQSVGIQLDHIDTADLIVLPSDINVDLSQVIQVQEGLSLPDYL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01344257;
- 90% Identity
- iTF_01344257;
- 80% Identity
- -