Basic Information

Insect: Sialis lutaria
Gene Symbol: -
Assembly: GCA_949319165.1
Location: OX439238.1:23703351-23707690[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00062 0.034 14.8 0.2 1 23 227 249 227 249 0.98

2 10 0.00053 0.029 15.1 0.5 2 23 256 277 255 277 0.96

3 10 2.6e-07 1.4e-05 25.5 1.3 1 23 283 305 283 305 0.99

4 10 2.3e-05 0.0012 19.4 0.3 1 21 311 331 311 333 0.96

5 10 3.9e-05 0.0021 18.6 0.5 1 23 339 361 339 361 0.96

6 10 1.4e-08 7.7e-07 29.4 1.2 1 23 367 390 367 390 0.98

7 10 0.00012 0.0064 17.1 0.5 1 23 396 418 396 418 0.90

8 10 1.4e-05 0.00074 20.1 0.9 1 23 424 446 424 446 0.99

9 10 0.00068 0.037 14.7 3.4 1 23 456 478 456 478 0.98

10 10 9.1e-06 0.00049 20.6 1.6 1 23 482 505 482 505 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00062	0.034	14.8	0.2	1	23	227	249	227	249	0.98
2	10	0.00053	0.029	15.1	0.5	2	23	256	277	255	277	0.96
3	10	2.6e-07	1.4e-05	25.5	1.3	1	23	283	305	283	305	0.99
4	10	2.3e-05	0.0012	19.4	0.3	1	21	311	331	311	333	0.96
5	10	3.9e-05	0.0021	18.6	0.5	1	23	339	361	339	361	0.96
6	10	1.4e-08	7.7e-07	29.4	1.2	1	23	367	390	367	390	0.98
7	10	0.00012	0.0064	17.1	0.5	1	23	396	418	396	418	0.90
8	10	1.4e-05	0.00074	20.1	0.9	1	23	424	446	424	446	0.99
9	10	0.00068	0.037	14.7	3.4	1	23	456	478	456	478	0.98
10	10	9.1e-06	0.00049	20.6	1.6	1	23	482	505	482	505	0.95

Sequence Information

Coding Sequence: aTGGGAAGATTAAATACAAGTTTGAATAGAGTAATCATTTTCGATAAAGTATGTCGAGCTTGTATGATGGAAAAGGTTGGATTAAGGccgatatttaatttaaatattgctGATAATTTAATGTCAATTGCTGCTGTCAAAAAAGTGGAAAAAGCTGATTCTGTACTTCGAAAGTACCACAATATGCGAAAAAAGAAAGCAGAGTCAGAAAACGATGTGGAAGAAAATCAAGAGTTAGATAAAGTGGGATCCGACAACAAAACTGAATTAGAAAATGTCAGCTTTAGCAATACCGATCACGAATATACACAGCGTGTCAGACAATCATCAAGACTAGCtaaaaaagctaattttaaattaaaaacattgaaaGGCAAGAGTAAAATATTGCATGAATTGATACAATTTGATAAAGAAACTTCTGATGACGAGAAAGAACAACCACCAGTCAAAATTACTgctgtaaatatattttctgatGGTCCACCACCTCTAGTGCCTTTAGTGCCAATTGCACCTGAAGAAATACCAACTTTTCCGGTTGAAAAGAAAACTCCTCCGGTTGCGATTGCATTGAAACCTATATCAGATGAAACTCCTCCGTTGGTACCCCTAAAACCGATCATTCCAGGTTTAGAGGAATTGGCAATAATAACAAAAGATATAGTTAAGCCAAAATTTTCATGCCAAATCTGTTATGAGGAGTTTTCAGATCCATTGAAACTTAAAGGACATATGTCGATACATTCCCAAGAAAACAGACTTACATGtaatatttgtaagaaagagtTCAATGATAGCAAGAGACTGATAGGTCACTTGAAAGGGCACATGGTAGTTAAACGCTATGAATGTAAATTTTGCGGCAAGCGGTACCCAAACCCAAGTACTTTTAAAGTTCATATGAGATCTCATACtgGTGAGAGGCCGTACAAGTGTCCGACATGTGGTAAAGGCTTTGTACGGTGGGCTGCGGTTGCCGTGCACATGAAGTGTCATGAGTCAAGTACACCATATCGGTGTGAGCTGTGTAAGCGCGGTTTTAAGCTGGCGTCCAACTTGGAGCGGCACAAAGTAATACACACGGGTTCCATGCCGTACATCTGCAGTTACTGTGGCAAGACGTTTACGCAGAACGATAATCTGCAGTTGCATGTGAGGACGTACCACACTTTCGAGAGGCCTTATCTCTGTAGTAAATGTGGTAAAGGTTTTGTGAGTGCGACCAGACTAAACAGACACATGTGGACACACTCAGGTAAAAAACAGTACACCTGCCGAACGTGCAACAAAGGTTATGCCAACCTGAACGACCTGCGCAACCACATGAAAATTCACGGCATGCAAGGTGACGACAGTAAACGGTACGCTTGCGAGGTATGCGACCTGAGGTTCTACCACAAGTGTCGACTGGCAAGGCACATCAAAGTGCACGAGCGGCCACATATCTGTGCGGTGTGTAATAAGACGTTCAGTAGGGAGGAGCTCTTGATGAAGCACATGACAATGAAGCACGGTGTAGGGGGGGAGGGTGATGTTCAACAGGAACCTGTTATAGATATTGATATTGTCGAGCATGTCAAAATTGAGTCGAGTGATGGGTTAGTGTTTCAGAGGTATTGA
Protein Sequence: MGRLNTSLNRVIIFDKVCRACMMEKVGLRPIFNLNIADNLMSIAAVKKVEKADSVLRKYHNMRKKKAESENDVEENQELDKVGSDNKTELENVSFSNTDHEYTQRVRQSSRLAKKANFKLKTLKGKSKILHELIQFDKETSDDEKEQPPVKITAVNIFSDGPPPLVPLVPIAPEEIPTFPVEKKTPPVAIALKPISDETPPLVPLKPIIPGLEELAIITKDIVKPKFSCQICYEEFSDPLKLKGHMSIHSQENRLTCNICKKEFNDSKRLIGHLKGHMVVKRYECKFCGKRYPNPSTFKVHMRSHTGERPYKCPTCGKGFVRWAAVAVHMKCHESSTPYRCELCKRGFKLASNLERHKVIHTGSMPYICSYCGKTFTQNDNLQLHVRTYHTFERPYLCSKCGKGFVSATRLNRHMWTHSGKKQYTCRTCNKGYANLNDLRNHMKIHGMQGDDSKRYACEVCDLRFYHKCRLARHIKVHERPHICAVCNKTFSREELLMKHMTMKHGVGGEGDVQQEPVIDIDIVEHVKIESSDGLVFQRY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01343325;
90% Identity: iTF_01343325;
80% Identity: -