Basic Information

Insect: Sialis fuliginosa
Gene Symbol: -
Assembly: GCA_961205875.1
Location: OY540817.1:14063908-14066509[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00062 0.033 14.8 0.2 1 23 254 276 254 276 0.98

2 10 0.00053 0.028 15.0 0.5 2 23 283 304 282 304 0.96

3 10 2.6e-07 1.4e-05 25.4 1.3 1 23 310 332 310 332 0.99

4 10 2.3e-05 0.0012 19.3 0.3 1 21 338 358 338 360 0.96

5 10 5.2e-05 0.0028 18.2 0.3 1 23 366 388 366 388 0.96

6 10 1.4e-08 7.6e-07 29.4 1.2 1 23 394 417 394 417 0.98

7 10 0.00012 0.0063 17.0 0.5 1 23 423 445 423 445 0.90

8 10 1.4e-05 0.00073 20.0 0.9 1 23 451 473 451 473 0.99

9 10 0.00067 0.036 14.7 3.4 1 23 483 505 483 505 0.98

10 10 2.8e-05 0.0015 19.0 1.1 1 23 509 532 509 532 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00062	0.033	14.8	0.2	1	23	254	276	254	276	0.98
2	10	0.00053	0.028	15.0	0.5	2	23	283	304	282	304	0.96
3	10	2.6e-07	1.4e-05	25.4	1.3	1	23	310	332	310	332	0.99
4	10	2.3e-05	0.0012	19.3	0.3	1	21	338	358	338	360	0.96
5	10	5.2e-05	0.0028	18.2	0.3	1	23	366	388	366	388	0.96
6	10	1.4e-08	7.6e-07	29.4	1.2	1	23	394	417	394	417	0.98
7	10	0.00012	0.0063	17.0	0.5	1	23	423	445	423	445	0.90
8	10	1.4e-05	0.00073	20.0	0.9	1	23	451	473	451	473	0.99
9	10	0.00067	0.036	14.7	3.4	1	23	483	505	483	505	0.98
10	10	2.8e-05	0.0015	19.0	1.1	1	23	509	532	509	532	0.93

Sequence Information

Coding Sequence: atgggaAGATTAAATACAAGTTTGAATAGAGTAATCGTTTTCGATAAAATATGTCGAGCTTGTATGATGGAAAAGGTTGGATTAGGGccgatatttaatttaaacattgcTGATAATTTAATGTCAATTGCTGCTGTCAAAataaaacaAAATGACGAATTACCTTCAAAAATATGTAGCgattgtcttaaaaaattacaatattcgATCGTATTCAAACAGAAAGTGGAAAAAGCCGATTCTGTACTTCGAAAGTACCACAGTTTGCAAAAAAAGAAAGCAGAATCAGAAAACGATGTGGAAGAAAATCAAGAGTTAGATCAAGTAGGATCCAACAGTAaaactgaattaaaaaatatcagctTTACCAATACCGATCATGAGTATACACAGCGTGTCAGACAATCATCTAGATTAGCTAAAAAagctaattttaaattaaaaacatcgaAAGGCAAGAGTAAAATACTGCATGAATTGATACAATTTGATAAAGAAAATTCTGAAGATGAGAAAGAACAACCATCACTAAAAATTACTgctgtaaatatattttctgacGGTCCGCCACCTCTAGTGCCTTTAGTGCCAATCGCACCTGAAGAAATACCAACTTTTCCAGTAGAAAAGAAAACTCCTTTAGTTGCGATTGCATTGAAACCTATATCAGATGAAACTCCCCCGTTGGTACCACTAAAACCGATCATTCCAGGTTTAGAAGAATTGGCAATAATAACAAAAGATATAGTCAAGCCAAAGTTTTCATGCCAAATCTGTTATGAAGAGTTTTCAGATCCGTTGAAACTTAAAGGGCATATGTCGATACATTCCCAAGAAAATAGACTTACATGTAATATTTGTAAGAAAGAGTTCAATGATAGCAAGAGACTGATAGGTCATTTGAAAGGGCACATGGTAGTTAAACGCTATGAGTGTAAATTTTGCGGCAAGCGGTACCCAAACCCAAGTACTTTTAAAGTTCATATGCGATCTCATACTgGCGAGAGGCCGTACAAGTGTCCGACATGTGGTAAAGGCTTTGTACGGTGGGCTGCGGTCGCCGTGCACATGAAGTGCCATGAGTCAAATACACCATACCGGTGTGAGCTGTGTGAGCGCGGCTTCAAGCTGGCATCCAATCTGGAGCGGCATAAGGTCATACACACGGGCTCCATGCCGTACATCTGCAGTTACTGTGGCAAGACATTCACGCAGAACGATAATCTGCAGTTGCATGTGAGGACATACCATACGTTCGAGAGGCCTTACCTCTGCAGTAAATGCGGTAAAGGTTTTGTGAGTGCGACCAGACTCAACAGACATATGTGGACACACTCAGGTAAAAAACAGTACACCTGCCGAACGTGCAACAAAGGTTACGCCAACCTGAACGACCTGCGCAACCACATGAAGATCCACGGTATGCAGGGTGACGACAGCAAACGGTATGCATGCGAGGTATGCGACCTGAGGTTCTACCACAAGTGTCGGCTGGCAAGGCACATCAAAGTGCACGAACGGCCACATATCTGTGCGGTGTGTAATAAGACGTTCAGCAGGGAGGAGCTCCTGGTGAAACACATGACATTGAAGCATGGTGTAGGGGAGGGTGATGTTCAACAGGAACCcgttatagatattgatattgtTGAGCATGTCAAAATCGAGTCGAGTGATGGGTTAGTGTTTCAGAGGTATTGA
Protein Sequence: MGRLNTSLNRVIVFDKICRACMMEKVGLGPIFNLNIADNLMSIAAVKIKQNDELPSKICSDCLKKLQYSIVFKQKVEKADSVLRKYHSLQKKKAESENDVEENQELDQVGSNSKTELKNISFTNTDHEYTQRVRQSSRLAKKANFKLKTSKGKSKILHELIQFDKENSEDEKEQPSLKITAVNIFSDGPPPLVPLVPIAPEEIPTFPVEKKTPLVAIALKPISDETPPLVPLKPIIPGLEELAIITKDIVKPKFSCQICYEEFSDPLKLKGHMSIHSQENRLTCNICKKEFNDSKRLIGHLKGHMVVKRYECKFCGKRYPNPSTFKVHMRSHTGERPYKCPTCGKGFVRWAAVAVHMKCHESNTPYRCELCERGFKLASNLERHKVIHTGSMPYICSYCGKTFTQNDNLQLHVRTYHTFERPYLCSKCGKGFVSATRLNRHMWTHSGKKQYTCRTCNKGYANLNDLRNHMKIHGMQGDDSKRYACEVCDLRFYHKCRLARHIKVHERPHICAVCNKTFSREELLVKHMTLKHGVGEGDVQQEPVIDIDIVEHVKIESSDGLVFQRY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01344251;
90% Identity: iTF_01344251;
80% Identity: -