Basic Information

Insect: Sialis lutaria
Gene Symbol: -
Assembly: GCA_949319165.1
Location: OX439241.1:12331230-12333226[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.097 5.3 7.9 0.4 2 23 175 197 175 197 0.94

2 16 0.00027 0.014 16.0 4.7 1 23 202 224 202 224 0.98

3 16 0.036 2 9.3 6.1 1 23 230 252 230 252 0.98

4 16 8.9e-06 0.00048 20.7 1.9 1 23 258 280 258 280 0.98

5 16 1e-05 0.00056 20.5 0.2 1 23 286 308 286 308 0.96

6 16 3.9e-06 0.00021 21.8 1.7 1 23 314 336 314 336 0.98

7 16 0.0021 0.11 13.2 2.5 1 23 350 372 350 372 0.95

8 16 0.00037 0.02 15.6 3.8 3 23 380 400 378 400 0.97

9 16 0.19 10 7.0 0.8 2 23 411 429 411 429 0.82

10 16 0.0076 0.41 11.4 1.8 1 23 435 457 435 457 0.94

11 16 0.00011 0.006 17.2 3.2 1 23 463 485 463 485 0.96

12 16 1.2e-05 0.00063 20.3 3.1 1 23 491 513 491 513 0.97

13 16 0.25 14 6.7 1.4 1 19 530 548 530 550 0.95

14 16 1.4e-06 7.8e-05 23.1 1.3 1 23 563 585 563 585 0.98

15 16 1.2e-05 0.00065 20.2 0.8 1 23 591 613 591 613 0.98

16 16 0.00013 0.0068 17.0 0.7 1 23 620 642 620 642 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.097	5.3	7.9	0.4	2	23	175	197	175	197	0.94
2	16	0.00027	0.014	16.0	4.7	1	23	202	224	202	224	0.98
3	16	0.036	2	9.3	6.1	1	23	230	252	230	252	0.98
4	16	8.9e-06	0.00048	20.7	1.9	1	23	258	280	258	280	0.98
5	16	1e-05	0.00056	20.5	0.2	1	23	286	308	286	308	0.96
6	16	3.9e-06	0.00021	21.8	1.7	1	23	314	336	314	336	0.98
7	16	0.0021	0.11	13.2	2.5	1	23	350	372	350	372	0.95
8	16	0.00037	0.02	15.6	3.8	3	23	380	400	378	400	0.97
9	16	0.19	10	7.0	0.8	2	23	411	429	411	429	0.82
10	16	0.0076	0.41	11.4	1.8	1	23	435	457	435	457	0.94
11	16	0.00011	0.006	17.2	3.2	1	23	463	485	463	485	0.96
12	16	1.2e-05	0.00063	20.3	3.1	1	23	491	513	491	513	0.97
13	16	0.25	14	6.7	1.4	1	19	530	548	530	550	0.95
14	16	1.4e-06	7.8e-05	23.1	1.3	1	23	563	585	563	585	0.98
15	16	1.2e-05	0.00065	20.2	0.8	1	23	591	613	591	613	0.98
16	16	0.00013	0.0068	17.0	0.7	1	23	620	642	620	642	0.98

Sequence Information

Coding Sequence: atgtcgTCATTagaatttgaagatgaaattaaTTTGAGATGCAGAATATGTTTAGCTGTAGGCCAAGgatttttgaacatttattttgacaatattttgaataaaagtaTTGTTGATATTGTAATGGAGTGCTTTCCAGTGCATATGGAACAAGAAGATGGATTACCAAATACAATATGTGGTTCTTGTATAGAAAATGTAGAGTTTGTTTATTCATTTAGAAGAGTATGTTTGGATTCTGATATAAAATTGCGCGAGTGTGCTTCTTGCCAATCAACAGaaaataatatgataatatCTGAAAACGTCAAGAAAGTATTAAACGAAATACATTCAATTAAaccaaataaattcaataatcaCACTGTGGAAAAATCATGTAATGATccatatatagataaatatattgaaGATGAGGTAAATGAAAATGATACAAATATAGCGTATGGTGATGAATATGTGCATTTTGAATTTTCGAAAGACTTTGAAGTAAAAGATACCACTGATGATAAAGAAAATCGTAGATGTAATATTTGTTTGCAATATTTTGAAAGTATAGCAGAACTAAAACAACACAAGAGTATATTTCATGATTTAAGACGACACAAATGCAAAGCTTGTGGCAAAGATTTTAAACAACTGATGCATTTGAAAACACACGTCAAGATTCATACAGATATTAAACCATACCAGTGCCGCTTCTGtcctaaaaaattcaaatatttatcaaCTAAAAAAAACCATGAGTGTGTTCACATGAACATATATCCATACGAATGCAAAACTTGTTCAAAAAAGTTCATTTATCAATCAGCGTTAATAAGACATCGAAAACTACATGAAGgcgttaaaaattatatttgcgaTTACTGTGATAAAAGATTTATTGTGTCTGCAGATTTAAGACGACATACTGTAGTGCATTTAGGTTTGACTCCGTACGAATGTACTGTTTGCaagaaaaaatttacttttcaaTCGGCGTTAATCACTCATAGAAAAATTCATGAAAGAGATAATCTTGATTCGGAAAATACGAATAAGTTACATAAGTGCcaattttgtaaaaaacaatttgctgATATAAGTTACTTAAAACAACATGAAGTTGTTCACACAGATCAGAGACCTTACGgatgtaaattttgtaaaaagaaATTCAAGTTCCGCTCTGCATTATCGACACATCAGAAATCACATACGTTAGGTGTTGATGGTACAACTATGAACGaatgtaaaatatgtaaaaaacaatttgccgaTTTAAAACAGCATCAAGTAGTGCATTCTAATTTAGCTCCATATGAATGTatattttgcaagaaaaaattcaaatttcgttCTGCTTTATCGGTACATTGGAAATTGCACACTGGAGATAAAAAACATGAATGTAAATTTTGCAATAAGAGATTTACTATATCGGGTAATTTAAAGAGGCATGAGGTAACACATTTAAATGCAACACCATACCAATGCCAGAATTGTAAAAAAGAGTTTAGTTTTCAATCCTCACTCAGGAAGCATAGAATTTTACATTGTAAAAATGACAACAATGAAGATGTTCCTAGAAAAGATGAGAACCTCCATAGTTGTTATGTTTGTTCATCTAAATTCacatctcaaaaactattattgACTCAtagtgaaaattgtaaaaatgataccaagtcaaatacaaaattatttgaatgtgATATCTGTGATAAAACTTTCAACAATTACCGAGCTCTTGTAAGACATAAAAAAACGCATATGGAACATAAACCTTTTGAATGTTCTGTTTGCTTAAAGAAGTTTACCGAGTCGGGAAATCTAAGAAAACATGAAAGAATACATTTGAAGAATTTGGTTCGTTATGAATGTACTAActgtaaagaaatatttaaaaaattagaagAATTAAAAGAACATGAACAAactcattttacaactagttaa
Protein Sequence: MSSLEFEDEINLRCRICLAVGQGFLNIYFDNILNKSIVDIVMECFPVHMEQEDGLPNTICGSCIENVEFVYSFRRVCLDSDIKLRECASCQSTENNMIISENVKKVLNEIHSIKPNKFNNHTVEKSCNDPYIDKYIEDEVNENDTNIAYGDEYVHFEFSKDFEVKDTTDDKENRRCNICLQYFESIAELKQHKSIFHDLRRHKCKACGKDFKQLMHLKTHVKIHTDIKPYQCRFCPKKFKYLSTKKNHECVHMNIYPYECKTCSKKFIYQSALIRHRKLHEGVKNYICDYCDKRFIVSADLRRHTVVHLGLTPYECTVCKKKFTFQSALITHRKIHERDNLDSENTNKLHKCQFCKKQFADISYLKQHEVVHTDQRPYGCKFCKKKFKFRSALSTHQKSHTLGVDGTTMNECKICKKQFADLKQHQVVHSNLAPYECIFCKKKFKFRSALSVHWKLHTGDKKHECKFCNKRFTISGNLKRHEVTHLNATPYQCQNCKKEFSFQSSLRKHRILHCKNDNNEDVPRKDENLHSCYVCSSKFTSQKLLLTHSENCKNDTKSNTKLFECDICDKTFNNYRALVRHKKTHMEHKPFECSVCLKKFTESGNLRKHERIHLKNLVRYECTNCKEIFKKLEELKEHEQTHFTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01343296;
90% Identity: iTF_01343296;
80% Identity: -