Basic Information

Insect: Sialis fuliginosa
Gene Symbol: -
Assembly: GCA_961205875.1
Location: OY540809.1:43571261-43573239[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.082 4.4 8.1 0.4 2 23 169 191 169 191 0.94

2 16 2e-05 0.0011 19.4 4.2 1 23 196 218 196 218 0.98

3 16 0.033 1.8 9.3 6.1 1 23 224 246 224 246 0.98

4 16 8.3e-06 0.00044 20.7 1.9 1 23 252 274 252 274 0.98

5 16 1.4e-05 0.00074 20.0 0.1 1 23 280 302 280 302 0.95

6 16 2.7e-06 0.00015 22.2 1.6 1 23 308 330 308 330 0.98

7 16 0.0019 0.1 13.2 2.9 1 23 344 366 344 366 0.95

8 16 0.00014 0.0075 16.8 2.8 3 23 374 394 372 394 0.97

9 16 0.18 9.6 7.0 0.8 2 23 405 423 405 423 0.82

10 16 0.0061 0.33 11.6 1.5 1 23 429 451 429 451 0.94

11 16 0.00013 0.0068 16.9 3.4 1 23 457 479 457 479 0.96

12 16 2.3e-05 0.0012 19.3 3.3 1 23 485 507 485 507 0.97

13 16 0.073 3.9 8.2 0.7 1 19 524 542 524 544 0.95

14 16 7.9e-07 4.2e-05 23.9 1.3 1 23 557 579 557 579 0.98

15 16 1.1e-05 0.0006 20.3 0.8 1 23 585 607 585 607 0.98

16 16 0.0035 0.19 12.4 1.0 1 23 614 636 614 636 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.082	4.4	8.1	0.4	2	23	169	191	169	191	0.94
2	16	2e-05	0.0011	19.4	4.2	1	23	196	218	196	218	0.98
3	16	0.033	1.8	9.3	6.1	1	23	224	246	224	246	0.98
4	16	8.3e-06	0.00044	20.7	1.9	1	23	252	274	252	274	0.98
5	16	1.4e-05	0.00074	20.0	0.1	1	23	280	302	280	302	0.95
6	16	2.7e-06	0.00015	22.2	1.6	1	23	308	330	308	330	0.98
7	16	0.0019	0.1	13.2	2.9	1	23	344	366	344	366	0.95
8	16	0.00014	0.0075	16.8	2.8	3	23	374	394	372	394	0.97
9	16	0.18	9.6	7.0	0.8	2	23	405	423	405	423	0.82
10	16	0.0061	0.33	11.6	1.5	1	23	429	451	429	451	0.94
11	16	0.00013	0.0068	16.9	3.4	1	23	457	479	457	479	0.96
12	16	2.3e-05	0.0012	19.3	3.3	1	23	485	507	485	507	0.97
13	16	0.073	3.9	8.2	0.7	1	19	524	542	524	544	0.95
14	16	7.9e-07	4.2e-05	23.9	1.3	1	23	557	579	557	579	0.98
15	16	1.1e-05	0.0006	20.3	0.8	1	23	585	607	585	607	0.98
16	16	0.0035	0.19	12.4	1.0	1	23	614	636	614	636	0.99

Sequence Information

Coding Sequence: ATGTCTTTAAAATTTGAAGATGGAATTAATTTGCGATGCAGAATATGTTTAGCTGTAGGTCAAgaatttttgaacatttattttgacaatatttttaataaaaatattgttgatattGTAATGGAGTGCTTTCCAGTGCAAATGGAACAAGAAGATGGATTACCAAATACAATATGTGGTGCTTGTGCAGAAAATGTAGAGTTTGTTTATTCATTTAGAAGAGTTTGTTTAGATTCTGATATAAAATTGCGCGAGTGTGCTTCTTGCCTAACAAcagaaaataatatgataattcCTGAAAATGTAACGAAAGTATTAAACGAAATATActcaattaaacaaaataaatttaataatcacACTGTGGAAAAatacatagataaatatattgaaGATGAGGTAAATGAGAATGATACAAACACAGTATATGGTGACGAATATGTGCATTTAGAATTTTCAAAAGACTTTGAAGTAAAAGAAATCACTGATGATAAAGAAAATCGTAGATGTAATATTTGTTTGCAATATTTTGAAAGTATAGGAGAACTAAAACAACACAAGAGCATATCTCATGATTTAAGACGACACAAATGCAAAGCTTGTGGCAAAGCTTTTAAACAACTGATGCACTTGAAAACACATATCAAAATTCATACAGATATTAAACCATACCAGTGCCGTTTCTGtcctaaaaaattcaaatatttatcaaCCAAAAAGAACCATGAGTGTGTTCACATGAACATATATCCTTATGAATGCAAAACTTGTTCAAAAAAGTTCATTTATCAATCAGCGTTAATAAGACATCGAAAACTACACGAAGGcatcaaaaattacatttgcgATTACTGTGATAAGAGATTTGTTGTATCTGCAGATTTAAAAAGACATGCTGTAGTACATTTAGGGTTGACTCCGTACGAATGTAATgtttgtaagaaaaaatttacttttcaatCGGCATTAATCACTCACAGAAAAATTCATGAAAAGAATAATCTTGTTTCAGAAAATACAAATAAGTTACACAAGTGCCAGTTTTGTAAAAAACAATTTGCTGATATGAGTTACCTAAAGCAGCATGAAGTAGTTCACACAGATCAGAGACCTTATGgatgtaaattttgtaaaaagaaATTCAAATTCCGCTCTGCATTATCGGCGCATCAGAAATCACATACGTTAGGTATTGATGGTACAGCTATAAACGaatgtaaaatatgtaagaaaCAATTTGCTGATCTGAAACAGCATCAAGTCGTGCATTCTAATTTAGCTCcatatgaatgtatattttgcaagaaaaaattcaaatttcgttCTGCTTTATTGGTACATTGGAAATTACACACTGGAGATAAAAAACACGAATGTAAATTTTGCAATAAGAAATTTACTATATCGGGTAATTTGAAGAGACATGAGGTAACTCATTTAAATGTAACACCATACCAATGCCAgaactgtaaaaaaaagtttaatttccaATCGGCACTCAGGAAACACAGAATTTTACATTGTAAAAATGACAACAATGAAGATGTTCATATACAAGATAAGAACGTCCATAGTTGTTCTGTTTGTTCATCTAAATTCacatctcaaaaactattattGATTCATAGTGAAAATTGTAAGAATGATACCGAgtcaaatacaaaattatttgaatgTGATATCTGTGATAAAACTTTCAACAATTACCGAGCTCTTATTagacataaaaaaacacatatggAACATAAACCGTTTGAATGTTCTGTTTGCTTAAAGAAGTTTACCGAATCAGGAAATCTACGAAAACATGAAAGAATACATTTAAAGAATTTAGTTCGTTATGAATGTACTAATTgtaaagatatatttaaaaaattagaagAATTAAAAGAACATGAAAAAACTCATTTTACAATTAGTTAG
Protein Sequence: MSLKFEDGINLRCRICLAVGQEFLNIYFDNIFNKNIVDIVMECFPVQMEQEDGLPNTICGACAENVEFVYSFRRVCLDSDIKLRECASCLTTENNMIIPENVTKVLNEIYSIKQNKFNNHTVEKYIDKYIEDEVNENDTNTVYGDEYVHLEFSKDFEVKEITDDKENRRCNICLQYFESIGELKQHKSISHDLRRHKCKACGKAFKQLMHLKTHIKIHTDIKPYQCRFCPKKFKYLSTKKNHECVHMNIYPYECKTCSKKFIYQSALIRHRKLHEGIKNYICDYCDKRFVVSADLKRHAVVHLGLTPYECNVCKKKFTFQSALITHRKIHEKNNLVSENTNKLHKCQFCKKQFADMSYLKQHEVVHTDQRPYGCKFCKKKFKFRSALSAHQKSHTLGIDGTAINECKICKKQFADLKQHQVVHSNLAPYECIFCKKKFKFRSALLVHWKLHTGDKKHECKFCNKKFTISGNLKRHEVTHLNVTPYQCQNCKKKFNFQSALRKHRILHCKNDNNEDVHIQDKNVHSCSVCSSKFTSQKLLLIHSENCKNDTESNTKLFECDICDKTFNNYRALIRHKKTHMEHKPFECSVCLKKFTESGNLRKHERIHLKNLVRYECTNCKDIFKKLEELKEHEKTHFTIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01344233;
90% Identity: iTF_01344233;
80% Identity: -