Slut007934.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sialis lutaria
Gene Symbol
-
Assembly
GCA_949319165.1
Location
OX439236.1:6010855-6013071[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 2.3e-05 0.0013 19.3 0.4 1 23 176 198 176 198 0.99
2 19 0.0001 0.0057 17.3 0.9 1 23 204 226 204 226 0.99
3 19 0.0081 0.44 11.3 3.9 1 23 232 254 232 254 0.96
4 19 0.0004 0.022 15.5 0.7 1 23 260 282 260 282 0.99
5 19 0.00016 0.0085 16.7 1.6 1 23 288 310 288 310 0.98
6 19 0.00023 0.012 16.2 0.4 1 23 340 362 340 362 0.98
7 19 9e-06 0.00049 20.6 1.3 1 23 368 390 368 390 0.99
8 19 0.016 0.88 10.4 0.2 1 23 396 418 396 418 0.98
9 19 0.00048 0.026 15.2 0.5 1 23 424 446 424 446 0.99
10 19 5.5e-05 0.003 18.2 0.2 1 23 453 475 453 475 0.98
11 19 0.00012 0.0063 17.1 1.1 1 23 481 503 481 503 0.99
12 19 0.011 0.59 10.9 0.3 1 23 509 531 509 531 0.98
13 19 0.00022 0.012 16.3 0.5 1 23 537 559 537 559 0.99
14 19 0.0005 0.027 15.1 0.5 1 23 566 588 566 588 0.98
15 19 1.6e-05 0.00088 19.8 1.5 1 23 594 616 594 616 0.99
16 19 0.013 0.7 10.7 0.4 1 23 622 644 622 644 0.98
17 19 0.0027 0.15 12.8 0.4 1 23 650 672 650 672 0.99
18 19 4.7e-05 0.0025 18.4 1.7 1 23 678 700 678 700 0.99
19 19 0.00012 0.0067 17.1 2.5 1 23 706 728 706 728 0.99

Sequence Information

Coding Sequence
atggctgagcctaacataaaaattaaagtagAACCCAAAGAAGAAGTGGTAGAAGCAGTCATTAGTTCTACAGAAACatctacatttaaaataaaagaggaGCCAAATGATTCTGATGAATTATCGAATATCTATGTTGAAAATTCTACATGGCTTGACGATGTTAAAGTTAAGTTACCGAGACTAGAAACGGACAATGGTTGCAACTCAAGTGATAATTTCACTAATGAAAATGTAGAAAATTGTACTAGTTTATCTAATAATAGCATAGTTTCAATGAATACATGTACTGAAAATACAAGTGAAGATAAAATAATGCCTAATATCAAAGTTAAGCAAGAATTTGGAAAAATAGAATTTATATCATTTCCAAACCTCCAGTTTGCGTCGGATGATTCTAATAGTAATGTCAAACAAGAAAATATTAACACAGAGCtcgaaataaaacaaaataataaattattccaatgtgaatatagcacCAATCAGGAAAAGAATTTGAATTTACATTCAGACAACAAACCCTATACTTGTGATATTTGTGATTATAGAACTGCACGGAGTGGTAATCTTGTAACACACAAGCGTATCCATACAGGCGAGCGTccatttaaatgtgaccagtgtgaatatagcgCCATTCAGAAAAATAGTTTGAATACTCATATGATGACACATTTAGGCAACAAACCTCATGCGTGTGACATTTGTGATTATAGAACTTTACACAGTAGTAATCTAGTAAAACATAAACGAACCCATACCGATGAACGCCCTTACAAATGTGGCCAGTGTGAATATGGTGCTCGGGATAAAAGTCGTTTGAATGATCATATGAAGACACATTCAAATGATAAACCCTATTCATGTGATATTTGTGATTATAAAACTGTACATAGTGGAGAACTTCTAAGACATAAGCAAACCCATACTGGCGAACAATTTATTAAGTGTGAGTATAGCACCCATGAAAAAGACACTTTGAAAGATCACATGACAGATTTAAGTGAAAAACCTTATGCATGTGACATGTGTGATTACAAAACTTCAAACAGTGGAGGACTTGTAACTCATAAACGTACCCATACTGGTGAACgtccttttaaatgtgaacagTGTGATTATAGCGCCCGTAACAAAAGTACATTAAACGATCATATCAAGACACATTTAAATGAACAACCCTATGCATGTGACTTATGTGATTACAAAACTTCATGGAGTGGTGCACTTGTGAAACATAAACGAACTCATACCGATGAACGCCCTTACAAATGCGGTCTGTGTGAATATGGCGCTCGTGATAAAAGTCGTTTGAATGAACATATGAAGACTCATTCTAACGAAAAATCTTCATATGCATGCGATATGTGTGATTACAAAACTTCAAACAGGGGAGGACTTGTGACTCATATACGTACCCATACTGGTGAACGTCCTTTTAAATGTGGCCAATGTGCATATAGCGCCCGTAACAAAAGCACATTAAACGATCACATGAAGACACATTCAAGTGATCAACCCTATGCATGTGACATGTGTGATTACAAAACTTCATGGAGTGGTGCACTTGTGAAACATAAACGAACCCATACCGACGAACGCCCTTACAAATGCGGTCTGTGTGAATATGGCGCTCGTGATAAAAGTCGTTTGAATGATCATATGAggacacatactaatgaaaaatcTTCTTACGCATGTGGCATGTGTGATTATAAAACTTCAAATAGGGGAGGGCTTTTAACTCATAAACGTACCCATACTGGTGAACGTCCTTTTAAATGTGTCCAGTGTGATTATAGCGCTCGGAACAAAAGCACATTGAATGATCACATGAAGACACATTCAAGTGATCAACCTTATGCATGTGACATGTGTGATTACAAAACTTCATGGAGGGGTGCACTTGTGAAACATAAACGAACTCATACCGACGAACGCCCTTACAAATGTGGTCTGTGTGAATATGGTGCTCGTGTTAAAAGTCGTTTGAATGATCATATGAAGACACATTCAAATGAGAAACCCTATTCGTGTGATATTTGTGATTATAAAACTGCACATAGTGGTGGACTAACAAGACATAAACGAACCCATACTGGCGAACGatcttttaaatgtgaccattGTGAGTATAGCGCCACTATGAAATGGAATTTAAAAACTCATATGAAGATACACTCAAGTAAAAAGCCTTATACACCAGGCACGTAA
Protein Sequence
MAEPNIKIKVEPKEEVVEAVISSTETSTFKIKEEPNDSDELSNIYVENSTWLDDVKVKLPRLETDNGCNSSDNFTNENVENCTSLSNNSIVSMNTCTENTSEDKIMPNIKVKQEFGKIEFISFPNLQFASDDSNSNVKQENINTELEIKQNNKLFQCEYSTNQEKNLNLHSDNKPYTCDICDYRTARSGNLVTHKRIHTGERPFKCDQCEYSAIQKNSLNTHMMTHLGNKPHACDICDYRTLHSSNLVKHKRTHTDERPYKCGQCEYGARDKSRLNDHMKTHSNDKPYSCDICDYKTVHSGELLRHKQTHTGEQFIKCEYSTHEKDTLKDHMTDLSEKPYACDMCDYKTSNSGGLVTHKRTHTGERPFKCEQCDYSARNKSTLNDHIKTHLNEQPYACDLCDYKTSWSGALVKHKRTHTDERPYKCGLCEYGARDKSRLNEHMKTHSNEKSSYACDMCDYKTSNRGGLVTHIRTHTGERPFKCGQCAYSARNKSTLNDHMKTHSSDQPYACDMCDYKTSWSGALVKHKRTHTDERPYKCGLCEYGARDKSRLNDHMRTHTNEKSSYACGMCDYKTSNRGGLLTHKRTHTGERPFKCVQCDYSARNKSTLNDHMKTHSSDQPYACDMCDYKTSWRGALVKHKRTHTDERPYKCGLCEYGARVKSRLNDHMKTHSNEKPYSCDICDYKTAHSGGLTRHKRTHTGERSFKCDHCEYSATMKWNLKTHMKIHSSKKPYTPGT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01343272;
90% Identity
-
80% Identity
-