Sful004285.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sialis fuliginosa
Gene Symbol
-
Assembly
GCA_961205875.1
Location
OY540811.1:10975113-10977212[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 8.8e-06 0.00047 20.6 0.7 1 23 135 157 135 157 0.99
2 20 9.2e-05 0.005 17.4 0.9 1 23 163 185 163 185 0.99
3 20 0.0016 0.089 13.4 2.8 1 23 191 213 191 213 0.95
4 20 0.0001 0.0054 17.2 0.7 1 23 219 241 219 241 0.99
5 20 0.00075 0.04 14.5 1.1 1 23 247 269 247 269 0.98
6 20 3.8e-05 0.0021 18.6 1.2 2 23 275 296 274 296 0.98
7 20 0.00048 0.026 15.1 2.3 1 23 302 324 302 324 0.98
8 20 1.5e-05 0.0008 19.9 1.6 1 23 330 352 330 352 0.99
9 20 0.005 0.27 11.9 0.4 1 23 358 380 358 380 0.96
10 20 0.0043 0.23 12.1 2.4 1 23 386 408 386 408 0.99
11 20 0.00014 0.0076 16.8 0.3 1 23 414 436 414 436 0.98
12 20 1.3e-05 0.00071 20.0 2.0 1 23 442 464 442 464 0.99
13 20 0.003 0.16 12.6 0.2 1 23 470 492 470 492 0.98
14 20 0.00047 0.025 15.1 0.7 1 23 498 520 498 520 0.99
15 20 0.00021 0.011 16.3 0.5 1 23 527 549 527 549 0.98
16 20 1.7e-05 0.00092 19.7 4.0 1 23 555 577 555 577 0.99
17 20 0.0048 0.26 12.0 0.2 1 23 583 605 583 605 0.98
18 20 0.00042 0.023 15.3 0.8 1 23 611 633 611 633 0.99
19 20 5e-05 0.0027 18.2 1.2 1 23 639 661 639 661 0.99
20 20 0.00012 0.0063 17.1 1.0 1 23 667 689 667 689 0.99

Sequence Information

Coding Sequence
atgtatattaaaaattctatatgGATTGACGATGTTAAAATAAAGTTACCGAGAGTAGAAACGGACTATGGTTGCAACTCAAACGATAATTTCATTAGTGAAAACGTAGAAGATTGTTCTAATTTTTCTAATAATGGCATAGTTTCAATGAATACATGTACTGAAAATACAAGTGAAGATAATGTAATATCTAATTCTAATATCAAAGTAAAGCAAGAATTTGGAAAAATAGAATTTATATCATTTCCAAACATTCAGTTTTCATCAGATGATTCTAACAGTATTgtcaaacaagaaaatattaacGCAGACCtagaattaaaacaaaacaataaattttttctatGTGAAAATAGCGCCACTCAAgaaggaaatttaaaattacattctgAAAACAAACCCTATACTTGTGATATCTGTGATTATAGAACTTCACGGAGTGGTAATCTTGTAACACACAAACGTATTCATACTGGCGAGCGCccatttaaatgcgaccagtgcGAATATAGTGCCATTCAGAAAAATAGTTTGAATACTCATATGATGACACATTTAGGCAACAAACCTCATGCGTGTGACATTTGTGATTATAAAACATTACACAGTAGTAATCTTATAAAACATGTACGAACTCATACCGACGAACGCCCATACAAATGCGGACAGTGTGATTATGGCGCTCGTGATAAAAGTCGTTTGAATGATCATATGAAGACACATTCAAGTGATAAACCGTATTCATGTGATATTTGTGATTATAAAACTGCACATAGTGGTGTTCTTATAAGACATAAACAAACTCATGGCGAACAATCTATTAAATGtaaccaatgtgaatatagcgcCCGTAACAAAAGCACTTTGAATGATCATATGAAGACACATTCAAGTAAACAACCCCATACATGTGACATGTGTGATTATAAAACTTCAAACAGGGGGGGACTTACAACTCATAAACGTATTCATACTGGTGAAcgtccttttaaatgtgaccaatgtgaatatagcgcCCGTAACAAAAGCACTTTGAATGATCATATGAAGACACATTCAAGAGAACAACCCCATGCATGTGATATGTGTGATTACAAAACTTCATGGAGTGGTGCACTTGTAAAACATATACGAACTCATACCGACGAACGCCCTTACAAATGCAGTCAGTGTGAATATGGCGCTCATGATAAAAGTCGTTTAAATGATCACATGAAAACACATTCAAGTAAACAACCCTATGCATGTGACATGTGTGATTACAGAACTTCAAACAGTGGAGGACTTGCAACTCATAAACGTACCCATACTGGTGAACGTCCTTTTAAATGTAATCAGTGTGAATATAGTGCCCGTAACAAAAGCACATTGAATGATCACATGAAGACACATTCAGGTGAACAACCCTATGCATGTGACATGTGTAATTACAAAACTTCATGGAGTGGTGCACTTGTAAAACATATACGAACTCATACCGACGAACGCCCTTACAAATGCAGTCAGTGTGAATATGGCGCTCGTGATAAAAGTCGTTTGAATGATCATATGAAGATACATTCTGGTGAAAAATCTTCTTATGCATGTGACATGTGTGATTACAAAACTTCAAACAGGGGGGGACTTACAACTCATAAACGTATTCATACTGGTGAACGTCCTTTTAAATGTAATCATTGTGAGTATAGCGCCCGTAACAAAAGCACATTGAATGATCATATGAAGACACATTCGGGTGAACAACCCTATGCATGTGACATTTGTGATTACAAAACTTCATGGAGTGGTGCACTTGTAAAACATAAACGAACTCATACCGACGAACGCCCTTACAAATGCAGTCTGTGTGATTATGGCGCTCGTGTTAAAAGTCGTTTGAATGACCATATGAAGACACATTCAAGTGATAAACCCTATTCATGTGATATTTGTGATTATAAAACTGCACATAGTGGTGGACTAATAAGACATAAACGTACCCATACTGGCGAACGatcttttaaatgtgaccagtGTGAGTATAGCGCCACTATGAAATGGAATTTAAAAACTCATATGAAGATACACTCAAGTACAAAACCCTATACACTAGGCTCGTAA
Protein Sequence
MYIKNSIWIDDVKIKLPRVETDYGCNSNDNFISENVEDCSNFSNNGIVSMNTCTENTSEDNVISNSNIKVKQEFGKIEFISFPNIQFSSDDSNSIVKQENINADLELKQNNKFFLCENSATQEGNLKLHSENKPYTCDICDYRTSRSGNLVTHKRIHTGERPFKCDQCEYSAIQKNSLNTHMMTHLGNKPHACDICDYKTLHSSNLIKHVRTHTDERPYKCGQCDYGARDKSRLNDHMKTHSSDKPYSCDICDYKTAHSGVLIRHKQTHGEQSIKCNQCEYSARNKSTLNDHMKTHSSKQPHTCDMCDYKTSNRGGLTTHKRIHTGERPFKCDQCEYSARNKSTLNDHMKTHSREQPHACDMCDYKTSWSGALVKHIRTHTDERPYKCSQCEYGAHDKSRLNDHMKTHSSKQPYACDMCDYRTSNSGGLATHKRTHTGERPFKCNQCEYSARNKSTLNDHMKTHSGEQPYACDMCNYKTSWSGALVKHIRTHTDERPYKCSQCEYGARDKSRLNDHMKIHSGEKSSYACDMCDYKTSNRGGLTTHKRIHTGERPFKCNHCEYSARNKSTLNDHMKTHSGEQPYACDICDYKTSWSGALVKHKRTHTDERPYKCSLCDYGARVKSRLNDHMKTHSSDKPYSCDICDYKTAHSGGLIRHKRTHTGERSFKCDQCEYSATMKWNLKTHMKIHSSTKPYTLGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01344213;
90% Identity
-
80% Identity
-