Slut012718.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sialis lutaria
Gene Symbol
-
Assembly
GCA_949319165.1
Location
OX439240.1:8565104-8578763[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00024 0.013 16.1 3.0 2 23 156 177 155 177 0.98
2 16 8.3e-06 0.00045 20.7 1.6 2 23 184 205 183 205 0.97
3 16 0.0013 0.07 13.9 2.0 1 23 214 236 214 236 0.96
4 16 7.2e-06 0.00039 20.9 0.3 1 23 315 337 315 337 0.99
5 16 1.6e-05 0.00089 19.8 5.0 2 23 344 365 343 365 0.97
6 16 0.00027 0.015 16.0 2.3 2 23 382 404 381 404 0.96
7 16 0.0011 0.062 14.0 6.9 1 23 461 483 461 483 0.97
8 16 0.0055 0.3 11.9 4.0 1 23 489 512 489 512 0.95
9 16 3.9e-06 0.00021 21.8 0.5 1 23 517 539 517 539 0.98
10 16 2.5e-06 0.00014 22.4 4.5 1 23 552 574 552 574 0.97
11 16 3.7e-07 2e-05 25.0 2.7 1 23 581 603 581 603 0.97
12 16 2.2e-06 0.00012 22.5 1.6 3 23 615 635 613 635 0.96
13 16 0.00013 0.007 17.0 4.4 1 23 641 663 641 663 0.99
14 16 1.2e-05 0.00063 20.3 1.5 1 23 669 691 669 691 0.96
15 16 7.9e-08 4.3e-06 27.1 0.2 1 23 697 719 697 719 0.99
16 16 0.00024 0.013 16.1 0.1 1 23 725 749 725 749 0.92

Sequence Information

Coding Sequence
ATGGAAGAAACTGAAAAAAGTAATCAACCGATACAAATAGATAAGCTTTGTCGTTCGTGTATGAACGAGAAAAACAACATGCAGTCGATTTTCGGTGAGCTCGAAATGGCGGGCCAGCAAGCCCAACTCTCAGAGATGCTTATGGCATGTGCCGCTGTGCAGGTAATCTGTGACGATGGTCTACCAGATGCAATCTGCGAGACCTGCGTCAGTCAACTGAGCAACGCGTACACATTCAAACAGCAATGCGAGAACACGGACAAGAAACTACGCGAGTTCGCCAACATGCCACCGCTGTCGAACATAAAAGTAGAACGCAACGACGCGGAAGCTCTAAGCATAGTCGTGAAACCCGATATAGACATCATGTCGGAAATGATATACGATGACGACTCAAACTTCCAAGGGCGATCGGACTCGGACACGGAATGGAACGAGAAATCTAAGAAGAAACTGCACCCCAACCAGTGCAAGTTCTGTAACAAGAAGCTGTCGTCTCGCCAAGGTCTCAAGATTCATATGAGAAAACATACCGGCGAGAATTTGAAGGTGTGTCCTATTTGCAATGCAAGCTTTACAAAAACAAACCATTTGAACAGGCATATGCAGATACATACAAGAAAGGCGAATGAAAAATCACACGTCTGTTCAATTTGTGGTGCTGGATTCAACAAGGCAttccatttattaaaacataagcAAGAGCACAAGACATCCAAGAACGGCGAGAAGGAAACAGAAAATAAAGATACTACCGAAACTCCTGTAACCGAAAACAAATCTGATATTAAATCCGAATTTGAGAACAACGAATTGATTATAAAGTCAGACGATGATGTCGGTATGGATGACATCGGTATGGACGATATCGGTATGGATGATGATGATGGATTTAACGATATCCCGGATCCTGTGAAATATGTACGGAAAGATAAAGGCACCTACGAGTGTAAGATTTGTCAGAAAATACTTACGACGGCTACGGGATTGCAAATTCATATGAGACGACATACTGGACATAATCTTTCTCAGTGTTATGTTTGCAACAAATCGTTTACAAAAACAAGCCACCTAAAACGGCATTTATCGACACACGGTGCTGCTGTCGAAGCCGCACAGACCAAGCCAGCGAAGGTGAGCCTCCCGTGCGAGTTCTGCGACCGCAAGTTTGTGTACCGCAAGAGCTTCGTGCACCATATGCGCTCAGAGCACGGCATATCGGACGACGAGAACATACCGCTGAGCGCGTACATCAAGACCGAGATGAAAGATGAGGAGCGCAAGGAGAACAGCGAGACCGTCGACGGGCAGGTCGCAGACGGCGCTCTCGACGACGAGGGACCGGACGAGATAGACGAGCTGACCGGCCAGAAGAAAGTGTTCGAGTGCCACGTGTGCCAACACCAGTTTGGCCGGTCGAACCATCTGACGAGACATATGACGCTGCATCGTAATGTGCTGAAACACAAGTGTGATAATTGTGAGAAGTCGTTCTTGACAGAGGAGCATCTCCAGAAACACGTGCAGGAATTCCATCTAGACAGACCGTACATTTGCACTATCTGTAATAAACCATTTGCTCGGGGTGAGCATTTGATTCGGCATCTAAAAGTACACGATAAAGATAAGAAGGATGGTGCCGAAACGTTAGAACATAAATGTTCTATTTGCGATAAGATATTTACAAGGAGCGATCATCTGGCAAGACACACAAAACTCCACCTAATGAAAGACAAGAGACACGTCTGCACTGTGTGCAACAAGTCATTCAACCGCTTAGACAACCTACGAACTCACCAGAGAGTTCACACAGGCCAGAGGGACCCCGTGAGACTGCATCTGTGCGTCTACTGCGGTAAAGAGTTCAACAACTCCAGTAACATGATCGTCCATATGCGACGGCATACAGGAGAAAGACCGTATAAATGCACCGTCTGTGGGAAAGGCTTCCCGCGGTCCCACGACCTCAAGTGTCACGAGAGAACTCATTCCGGAGAAAGACCGTATCTGTGTACGCTTTGCGGTAAATCGTTCAACAAGAGCAACAAACTGGTGCGTCACACCCGAGTTCACACAGGAGAGAGGCCATACGTGTGTAACATATGTGGACGTGCGTTCACACAATCCAACGACTTGGCGCTGCACATGCGTAGGCATACAGGGTCCAGGCCGTACGCTTGCGGAGTCTGTCCGGCCAGGTTCATTCAGTCCGGACAGCTTAAGGCTCACAGACGTTCGCAGGGCCATTGGGTCGAACAAGAAATTCAATTCCGAGGTAACCGTGTTGAGCCCGTTCACATAGAAGGCTTGGTCGAGACCCCGATAAAACACAGGAACCGTGTCAAAAACATCGTCAAACAAGAACTGACAGTCATGCCCGAGGTATTCGCAAACACATCACTTCTAGCGCTAGCCACCGGCAGCAACGTGCCTCCGCCTAAAGATTTCAGAATCATACCGCACGACGAGAACGAGATAAAACCCACAACAAGCGCTTCGGATGCGTTCCACGTGGCGACGGTCACGCAGACGTACCAGCCGAGCGCCACGACCAGCGCAGGGCCGTTTACGACAAGTGAGAGTTTTAATTTTCAGCAGTATGATTCGGTAATGTAA
Protein Sequence
MEETEKSNQPIQIDKLCRSCMNEKNNMQSIFGELEMAGQQAQLSEMLMACAAVQVICDDGLPDAICETCVSQLSNAYTFKQQCENTDKKLREFANMPPLSNIKVERNDAEALSIVVKPDIDIMSEMIYDDDSNFQGRSDSDTEWNEKSKKKLHPNQCKFCNKKLSSRQGLKIHMRKHTGENLKVCPICNASFTKTNHLNRHMQIHTRKANEKSHVCSICGAGFNKAFHLLKHKQEHKTSKNGEKETENKDTTETPVTENKSDIKSEFENNELIIKSDDDVGMDDIGMDDIGMDDDDGFNDIPDPVKYVRKDKGTYECKICQKILTTATGLQIHMRRHTGHNLSQCYVCNKSFTKTSHLKRHLSTHGAAVEAAQTKPAKVSLPCEFCDRKFVYRKSFVHHMRSEHGISDDENIPLSAYIKTEMKDEERKENSETVDGQVADGALDDEGPDEIDELTGQKKVFECHVCQHQFGRSNHLTRHMTLHRNVLKHKCDNCEKSFLTEEHLQKHVQEFHLDRPYICTICNKPFARGEHLIRHLKVHDKDKKDGAETLEHKCSICDKIFTRSDHLARHTKLHLMKDKRHVCTVCNKSFNRLDNLRTHQRVHTGQRDPVRLHLCVYCGKEFNNSSNMIVHMRRHTGERPYKCTVCGKGFPRSHDLKCHERTHSGERPYLCTLCGKSFNKSNKLVRHTRVHTGERPYVCNICGRAFTQSNDLALHMRRHTGSRPYACGVCPARFIQSGQLKAHRRSQGHWVEQEIQFRGNRVEPVHIEGLVETPIKHRNRVKNIVKQELTVMPEVFANTSLLALATGSNVPPPKDFRIIPHDENEIKPTTSASDAFHVATVTQTYQPSATTSAGPFTTSESFNFQQYDSVM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01343273;
90% Identity
iTF_01343273;
80% Identity
-