Sful018226.1
Basic Information
- Insect
- Sialis fuliginosa
- Gene Symbol
- L
- Assembly
- GCA_961205875.1
- Location
- OY540822.1:16739699-16745858[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 8e-05 0.0043 17.6 3.9 1 23 76 98 76 98 0.97 2 23 0.31 17 6.3 4.5 1 23 104 126 104 126 0.97 3 23 3.6e-06 0.0002 21.8 2.9 1 23 132 154 132 154 0.99 4 23 0.00026 0.014 15.9 0.1 1 23 160 182 160 182 0.98 5 23 0.0059 0.32 11.7 3.0 1 23 218 241 218 241 0.91 6 23 0.0029 0.15 12.7 0.8 2 23 330 352 329 352 0.96 7 23 2.4 1.3e+02 3.5 0.6 2 19 362 379 362 384 0.87 8 23 0.29 15 6.4 0.2 1 23 450 472 450 472 0.95 9 23 1.3e-05 0.00068 20.1 0.7 2 23 500 521 499 521 0.95 10 23 0.00059 0.032 14.8 0.3 1 23 529 552 529 552 0.93 11 23 0.067 3.6 8.4 0.2 1 23 557 580 557 580 0.92 12 23 5.2 2.8e+02 2.4 0.0 2 23 632 653 631 653 0.92 13 23 0.048 2.6 8.8 4.8 1 23 657 680 657 680 0.94 14 23 1.3 68 4.4 0.5 3 23 739 760 738 761 0.91 15 23 0.00016 0.0088 16.6 2.4 2 23 774 795 773 795 0.96 16 23 0.082 4.4 8.1 0.5 1 23 805 827 805 827 0.97 17 23 1.9 1e+02 3.8 2.1 2 23 835 856 835 856 0.95 18 23 0.73 39 5.1 0.1 2 23 875 896 874 896 0.95 19 23 0.085 4.6 8.0 2.4 1 23 973 995 973 995 0.97 20 23 0.71 38 5.1 1.3 1 23 1004 1026 1004 1026 0.96 21 23 0.0027 0.15 12.7 0.3 1 23 1034 1056 1034 1056 0.98 22 23 3.1 1.7e+02 3.1 1.5 1 23 1063 1085 1063 1085 0.93 23 23 0.0031 0.17 12.6 0.7 1 23 1134 1156 1134 1156 0.98
Sequence Information
- Coding Sequence
- ATGATGCTCTTTAAGGGACATAGTCACAGACTGGaactattaataaatagaaTACAAGCATCTAGGGagaattatttacttacaaaaaaaagagATGTATTGGGTACGGATGGGAGCAGCAGTTGGCGGTCAGAAACACCACCGACTCCGGCAACTACGGGTTCCGGTGTAGAGCTAACTGAAGAAGACTTAACATTTACAGTAGGAGCTACAGAATCAACTCCTTATGCTTGTCATTTCTGTAACAAAGCTTTTTCTagacttaattatttaaagaaaCATGAACAGTCTCATAGCGACCAAATGCCCTTTAGATGCGAATGGTGTTCTAGACTTTTCAAACACAAGAGATCACGAGATAGACATGTTAAACTTCACACCGGTGATAAAAAATACAGGTGCGCTCATTGTGAAGCTGCTTTTTCAAGAAGTGATCATTTGAAGATACATCTACGCACCCATGACAATGGTAAACCGTTCCAATGTGTTGTTTGTAATCGTGGATATAACACAGCTGCAGCACTTACTTCACACATACAGAATCACAAGAAGCAACAGGCACAGCCACAGCCACAGCCACAGCCATCTGAAACCATTACCAGTACAAGTAATGCTGGTAACGGAGATTCGCAATTTCACGAAGATACCAAACACGAATGTTTGCACTGTTCTAAAATATTTACCAGTCTTCAGGAACTAGagaaacATGAAACAAATAGTCACGTGCCAGAGAGTGACAGCGACAAACAAGTGGAAATATTTACACGATCTGAAACCGAGTCCATAACACCGAAGTTGGCCTGTATATATTGCGCACAAGATACTTTCAATACGATGGAAGAATTGCAGAATCACGTGGAATCGAATCACAAAGCTATAATAAATGGCGATATACAGACATCTTCTTCTCCAACTTTACAAAAGCCTTTTGCAACAACGTCCGCGTCGTCGCCAAGTCAGTCGTCATTGTCAGTCTCGTCTCAACTTTCTTGTAACTTGTGTACTATGAGATTTATGTCGTATCAAAATCTTCAAATGCATATTCTTACATCGCATAAGATATTTAATTTCACCCCTCAAGCTGTATGTTCGTATTGCTCTTTACCATTTAGAAGTATTGAAATGTTTGCCGAACATTGTGCCAAAGtacatagaaataaaataatagcaaATATTCCTGAACAAATTAAACCGACAGATCTGAGTAAAAAGACATACAACGATGACAAAATGGCCAAAAGGATAAAAAAGAATGAAGACATGTTATCGTCTTCTTCAAGCACGCCTACGCCTACGCCTACGCCTACTAATACTAATACTAATTCTCATTACGATCATTTTGGATTGTTTCTGTGTAATCAATGCGATGCGGGTCTTCCAGATTTCGAGTCTTTTAGATCACATTTAAAATTACACATAGAACATTCAGACGGTATGAAAAATAACGTCGAACAACGAAACTTTATGATAGATATGCTAAAAGATTCAATGCTACTGCCTTGTCCTCATTGCGGTCAAACTTTTAACGATTTGGCTATGCTCGAGAGACATATTTGTGCTCATTATTTCACCCCGATCACCGAGTACATGTGTCGTAGTTGTTCAAAAACATTTCCAAAAGCGGACGACTTACAAAACCATTTATTAGACGCCCATGCATATCATTTATATAGATGCTCGCTTTGCAGAGAAATGTTTGACTCAAAAGTCGCTATACAGGTTCATTTTGCTGTCAAACATAGCAGCGAGTGTCAAATGCTGCGATGTTTGATCTGTCCGTCGGACACACGCTCCGTGTTCCGTACAGAAAAGGCGAGCAAGATACATATTCGTACAAATCACGACAGCAGTATCTTCATGACTCCATTGCCGACAGCAGTGGGCAAACCACTACGCTGTAGTTTCTGTATCGCTGATTTTGACTCGGAAATAGATTTGCAGATTCATCTCGCTGTACATTTCGAGCCGTTCAAATGTACCATTTGTAACAAGTCTTTTCAAGTAGAGTATTTACTCGAGTGTCACATGCAAGAGTGCCACGAAGTTAAAGTTTCCAACGGTCTCAATGAAGTAGACAGTAACCACGGACTAGATACAGTTAAAACTAAAACCGATATACCGTTTTCACTCTCCGGAGCACCGAATAACAAACAGCTTCATCAAGTTGAGACCAGTTCAAGCCATCTTGAATCACCGAATTGCAAATCAAACAGTTGTGATATATGCGATCGAAATGATTTTAGCGAATCAGAACTAATTGCTCACAGGAAACTAGTTCACCATATCAAACCAACATCTAAAAACGGAGTGGTCAGCTTACATTGCGCTTACTGTAATGAAAACTTCAAATCAAGAACAGAACTTGAAAATCACATGAAAAATCATTCACAAAGCAGTGGCGTGTCCGgtaaacataaatgtaatatatgCGATGAACTTTGTCCGTCAGCAGCCGTACTGGCggaacataaattaacacactGTAAACTTATTTCTGCTAATTCTTGTACTCATTGTAAAGCTGTACTTTCAACTGACGACCAGTTCTATTCTCATTTTATCAAACACTGTGGAACTAATAATACatcaaataatactaataatcaGATATCTTTACCGACGCCTTGCGTTATTTGTAGACAAACACTCATGTCAAATATTGAACTTAGAATACACGCAAGGTTCCATTTAAGAACTAATAATGTATCTAATGAATATCAATGCGTTCTTTGTCTCAAGAACTTTGATAAGCCGAACGTGATTGTCGCGAATGAAAATTCAAATCAGTGCTTTACTTACATATGTAGAGAATGCTACACTCATCATAGTTTAGCAATTAATTTTCCCGATCAGAAAAATGATTTCAAATCTTCTAAAATCGCAACAGCGTTGATAGATTCgggtaataacaataaatattcgtGCCTAAAATGTCAATTGAGTTTTGAAACCGAATGTCAAGTCCAAAATCACGTTACTTCACATTTACTCAACGATAAAAATAATCAGTACATATGCCATTTGTGCAGAAGTAAATTATCTTCAGAGTTCaaattacaaatacatttaataGAACACACGTTCGTTGGGTTCGGAAGTTACACTTGTTACATATGCTCTACGGTTTTTACAGCATCCCAAGGTTTGTATTCACATATGTTAGAGCACGGTTTAGCTGCCAGACCGTACGATTGTCCGAGATGCAGTTCAAAGTTTTTCTTCAGAGCTGAACTGGACAATCATAGTTTCAGTCACATGGAGCACGATTCTTTATTAAGACAACAATCTGATGTAGATTTATTATCGGTGGTGTCGGGGCCCGGAGGATATGATCATTTATTAGATCAAATCGGCGGTTATGAGAAAACTTCATCCCCATCTAATACGAGTAAATCTACGTTTTGTTGTAACGAATGTCCAATCACTTTTCCAGATATTATATCGTTTTTGAATCACGTCAAGACACACGGTGTTACTAATCAAGAAAACGTACAAGATACAAGTACTAAACAAAATACAATGTACGAGTATACCAAACAAGAAAGTAAGAGTATGTACATTGACATTGAAGTAGCATCCTCGCCGaaacaaaatcatcaaaataacGCCAGTTGA
- Protein Sequence
- MMLFKGHSHRLELLINRIQASRENYLLTKKRDVLGTDGSSSWRSETPPTPATTGSGVELTEEDLTFTVGATESTPYACHFCNKAFSRLNYLKKHEQSHSDQMPFRCEWCSRLFKHKRSRDRHVKLHTGDKKYRCAHCEAAFSRSDHLKIHLRTHDNGKPFQCVVCNRGYNTAAALTSHIQNHKKQQAQPQPQPQPSETITSTSNAGNGDSQFHEDTKHECLHCSKIFTSLQELEKHETNSHVPESDSDKQVEIFTRSETESITPKLACIYCAQDTFNTMEELQNHVESNHKAIINGDIQTSSSPTLQKPFATTSASSPSQSSLSVSSQLSCNLCTMRFMSYQNLQMHILTSHKIFNFTPQAVCSYCSLPFRSIEMFAEHCAKVHRNKIIANIPEQIKPTDLSKKTYNDDKMAKRIKKNEDMLSSSSSTPTPTPTPTNTNTNSHYDHFGLFLCNQCDAGLPDFESFRSHLKLHIEHSDGMKNNVEQRNFMIDMLKDSMLLPCPHCGQTFNDLAMLERHICAHYFTPITEYMCRSCSKTFPKADDLQNHLLDAHAYHLYRCSLCREMFDSKVAIQVHFAVKHSSECQMLRCLICPSDTRSVFRTEKASKIHIRTNHDSSIFMTPLPTAVGKPLRCSFCIADFDSEIDLQIHLAVHFEPFKCTICNKSFQVEYLLECHMQECHEVKVSNGLNEVDSNHGLDTVKTKTDIPFSLSGAPNNKQLHQVETSSSHLESPNCKSNSCDICDRNDFSESELIAHRKLVHHIKPTSKNGVVSLHCAYCNENFKSRTELENHMKNHSQSSGVSGKHKCNICDELCPSAAVLAEHKLTHCKLISANSCTHCKAVLSTDDQFYSHFIKHCGTNNTSNNTNNQISLPTPCVICRQTLMSNIELRIHARFHLRTNNVSNEYQCVLCLKNFDKPNVIVANENSNQCFTYICRECYTHHSLAINFPDQKNDFKSSKIATALIDSGNNNKYSCLKCQLSFETECQVQNHVTSHLLNDKNNQYICHLCRSKLSSEFKLQIHLIEHTFVGFGSYTCYICSTVFTASQGLYSHMLEHGLAARPYDCPRCSSKFFFRAELDNHSFSHMEHDSLLRQQSDVDLLSVVSGPGGYDHLLDQIGGYEKTSSPSNTSKSTFCCNECPITFPDIISFLNHVKTHGVTNQENVQDTSTKQNTMYEYTKQESKSMYIDIEVASSPKQNHQNNAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01344368;
- 90% Identity
- -
- 80% Identity
- -