Sver006756.1
Basic Information
- Insect
- Shargacucullia verbasci
- Gene Symbol
- znf711_2
- Assembly
- GCA_947562105.1
- Location
- OX387301.1:3409358-3415623[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0048 0.36 11.7 1.9 2 23 73 94 72 94 0.96 2 12 0.011 0.87 10.5 1.0 3 23 102 123 100 123 0.94 3 12 0.77 59 4.7 0.2 2 23 131 153 130 153 0.89 4 12 0.00026 0.02 15.6 4.6 1 23 159 181 159 181 0.97 5 12 4.4e-05 0.0033 18.1 4.2 1 21 187 207 187 209 0.94 6 12 0.00011 0.0084 16.8 0.9 1 21 215 235 215 236 0.94 7 12 0.21 16 6.5 1.6 3 19 256 272 255 277 0.91 8 12 1.2e-05 0.00093 19.8 1.5 1 23 576 598 576 598 0.97 9 12 7.8e-05 0.0059 17.3 5.3 1 23 605 627 605 628 0.95 10 12 0.26 19 6.2 0.3 1 23 636 659 636 659 0.89 11 12 0.00053 0.04 14.6 3.9 1 23 665 689 665 689 0.93 12 12 8.4e-05 0.0063 17.2 1.7 1 21 695 715 695 716 0.95
Sequence Information
- Coding Sequence
- ATGGATTCGAATTTACCATTTTTTAGTCTCCCATTCGTGGATTCTGAATCGTCTGATTTGTTCAGACAGATTAGGCCTCAGGAGAATGGGTATGATGACTTAAGCTCTGGACTACCACCTCACAGTGCTCTCTTGGGCCCCGACGATGTCCTTGCTCAGTTTCTATCAGGCGACGAGCCATTGGAGGAGCCCGACTTGAACGGGCCGACTACGCTGCACTGTGAGATTTGTAAGAAGCAATTTGATAATGCTAAGAAGTATTACGGGCATCTGAGAGTCCATTCCAAGGATAATCTTTGGATTTGTGACAAATGTCCAAACCAGAAGTTTTCCACCAAGCAGCAGTTAATGAAACACAGCCTGACGCACAAGCCGCTGGGGAGAGAATGGAAGTGCTTGCAGTGCACCATGGCTTTTGAGGCTCTGTGGAAGCTCCAGCAGCATCTGTTTGCTAAGCATTTAGATTACAAGCCACACAAGTGTGATCAGTGTGAGAAGGCTTTTCACAAGCCCTCAGACCTTAAGAAGCACAAGGACATGCACAGTGACATAAAGAGACACCCATGCAGTGTATGCGAGATGCGTTTCAAGGACAAGTCTAACTTGAAGCGACACATGCTATGCCACAGCGGCGAGAAGCCGTTCTGTTGCCCAGGATGTGGGAACCGATTTAAACAGCTTGCGTCGTTGAAGCGTCACACTCAAGCTTGCGCTCTGAACAAGCACACGAGCGAACCAGTAGACAAGACGACACGGAAGAACTACTGCCGAGTGTGTGGCTTGAAATTCCAATACAAGAGCGCTTTGTTGGAGCACTGCGTCAGGCAACACACAAACAACGCACCAAAACCGCCAGAACCCGACAAAGAAGATAAAAGTCACCTCAACGATACCAATCGCATTGTAGACAATATAGTCGACGATATTCTGTCTGCTGAAGATGACTACATGACTATGTCAACTCAGAACGAAATACTGAACGTGTACAACCCGAACGACATAGACAACAATCCAGAGAACTTGATGCAAATAGAACTTCTCAAAGAAATGAACCAGCTGCACATATTAGATGGAGAACTTTTCTACAATGATATAGATTTTGACAGCATTCAACCAAGCCATATATTCAATAATAATACAAACGATATGGATTATAACACAGATAAGAATGCTGAAATACTCTTCGATTTTACAGACGGAGGCAAAAGTTTAGATCAAGATATAATGAATGCATTATTTCATGTTAAAGCTGAATATTTGCCTGATGAGTTACTAAACACTCCAGAAGCAATAAATACAGCTCCTGCAAAAAGTGACGAATTAGTAAATCCAGTGTCTGTGAATGAATGTGCTACTATATTTGAGAGTGATGTCGATTTAGAAGCTAGCACTAATCTAGCTGCAAATTTGAACCAGCTGATTGGTGAGAACACTGTCCAGTATATTTCTACTGAAGATGATGACACATTTATAATAAGTTTAAAAAGTGAGATTGATGCTGCACAGTTAACAGATATGTTAAATATAGGAGTAGAATTAGTAAATGATAAGACTGAGGAAGAGAAGGTTCCAGAAGTGAACCAAGATCCTGTTAGCGACGCTGAACCTATAGTTGTGAAGATTGAAGAGCCTGCAGCAGCTGTGGACGTAGATCTGTTGGGGCAAGATGTGAAAGAGAATAAACAAGTTCAGATCAAAGTGAAGAAATGTAAAAAAAGAGTGCTCTTTATTTGTAGAACTTGTAATAAGGTTTTCAGAAAGAAGGATAACTACAAATCGCATATTGCAATCCACGAGCCATCTCTCCGCCAACACAAGTGTAAGATCTGCGGGGACCGCTTCAGCTACCGCTCTACGCTCAACAAACACCTGCGCGCGCACCACACGCCTCGCGTGTTGCCGGCGCATGTGTGTCAGCTGTGTGACAAGACCTACTGGGCAGCGTGGATGTTGAAGGACCATTTGGACCGCGACCACGATGGTCTGACGCCGCATATTTGTGAACACAAAGGATGTGGCAAGAGCTTCTTCAAGAAGTCCGACCTCGCCGTGCACAAGAGGTACCATACTGGCGAGCGTCCGTTCTCGTGTGACATCTGCAAGAAAGCGTTCCAACACATATCGCATCTGAAGCGCCACGAACGAGCCGTCGACTGCACCAAACACGGGCGGCGCCGCAAGGGGAAGTGCGGCGCTAGAAGGCTCGTGCAGCTTCGCAGCGCCGCGCTACCCCTCCTTTGTCTTCAAATAACTATGGACTTTTTAGGGTCAGCGCCGACGGACGGAGTGGCGGCGAAGAGCAGTTTAGAGGTCGCAAACCCCACTGAGCGGCGCGCGGTCGTCGACGCACCGCGCCGATAA
- Protein Sequence
- MDSNLPFFSLPFVDSESSDLFRQIRPQENGYDDLSSGLPPHSALLGPDDVLAQFLSGDEPLEEPDLNGPTTLHCEICKKQFDNAKKYYGHLRVHSKDNLWICDKCPNQKFSTKQQLMKHSLTHKPLGREWKCLQCTMAFEALWKLQQHLFAKHLDYKPHKCDQCEKAFHKPSDLKKHKDMHSDIKRHPCSVCEMRFKDKSNLKRHMLCHSGEKPFCCPGCGNRFKQLASLKRHTQACALNKHTSEPVDKTTRKNYCRVCGLKFQYKSALLEHCVRQHTNNAPKPPEPDKEDKSHLNDTNRIVDNIVDDILSAEDDYMTMSTQNEILNVYNPNDIDNNPENLMQIELLKEMNQLHILDGELFYNDIDFDSIQPSHIFNNNTNDMDYNTDKNAEILFDFTDGGKSLDQDIMNALFHVKAEYLPDELLNTPEAINTAPAKSDELVNPVSVNECATIFESDVDLEASTNLAANLNQLIGENTVQYISTEDDDTFIISLKSEIDAAQLTDMLNIGVELVNDKTEEEKVPEVNQDPVSDAEPIVVKIEEPAAAVDVDLLGQDVKENKQVQIKVKKCKKRVLFICRTCNKVFRKKDNYKSHIAIHEPSLRQHKCKICGDRFSYRSTLNKHLRAHHTPRVLPAHVCQLCDKTYWAAWMLKDHLDRDHDGLTPHICEHKGCGKSFFKKSDLAVHKRYHTGERPFSCDICKKAFQHISHLKRHERAVDCTKHGRRRKGKCGARRLVQLRSAALPLLCLQITMDFLGSAPTDGVAAKSSLEVANPTERRAVVDAPRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00050182; iTF_01539016; iTF_00001398; iTF_00000578; iTF_00450426;
- 90% Identity
- -
- 80% Identity
- -