Aoxy017010.1
Basic Information
- Insect
- Allophyes oxyacanthae
- Gene Symbol
- Bcl11a
- Assembly
- GCA_932294395.1
- Location
- CAKOAO010000252.1:431230-439963[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0056 0.37 11.8 1.9 2 23 73 94 72 94 0.96 2 12 0.0078 0.51 11.3 0.8 2 23 101 123 100 123 0.95 3 12 0.42 28 5.9 0.4 2 23 131 153 130 153 0.90 4 12 0.0007 0.046 14.6 5.0 1 23 159 181 159 181 0.98 5 12 1.4e-06 9.4e-05 23.1 3.6 1 23 187 209 187 209 0.96 6 12 0.00053 0.035 15.0 0.4 1 20 215 234 215 236 0.94 7 12 0.064 4.2 8.5 1.2 3 19 256 272 255 277 0.91 8 12 6.6e-07 4.3e-05 24.2 1.6 1 23 574 596 574 596 0.98 9 12 0.00051 0.034 15.0 5.6 1 23 603 625 603 626 0.95 10 12 0.002 0.13 13.2 0.4 1 23 634 657 634 657 0.95 11 12 0.00033 0.022 15.7 2.6 2 23 664 687 663 687 0.93 12 12 0.00052 0.034 15.0 1.1 1 21 693 713 693 714 0.95
Sequence Information
- Coding Sequence
- ATGGATTCCAATTTACCATTTTTTAGTCTCCCATTTGTAGATTCTGAGTCGTCTGACTTGTTCAGACAGATTAGGCCTCAAGAGAGTGGGTATGATGACCTGCACTCTGCCCTACCGTCTCACAGCGCTCTCTTGGGCCCCGACGATGTGCTTGCTCAGTTTTTATCAGGCGACGAACCTCTGGAGGAGCCCGACTTGAATGGGCCGACTACGCTGCACTGTGAGATTTGTAAGAAGCAGTTTGATAATGCTAAGAAGTATTACGGGCATCTGAGAGTGCATTCCAAAGATAATCTTTGGGTTTGTGACAAATGTCCAAACGAGAAGTTTTCCACGAAGCAGCAGTTGATGAAACACAGCCTGACACACAAGCCGCTGGAGAGAGAATGGAAGTGCCTCCAGTGCTCCATGTCTTTTGAGGCTCTGTGGAAGCTGCAGCAACATCTATTTGCTAAGCATTTAGATTACAAGCCACACAAGTGTGATCAATGTGGTAAGGCCTTTCACAAGCTATCAGACCGCAAGAAGCATATGGACATGCATCGCGACATAAAGAGACATGCCTGCAGTGAATGCAAGATGCGTTTCAAGGACAAGTCGAATCTCAACAGACATATGCTACGCCACACCGGTGAGAAGCCTTACTGCTGTCCTGGGTGCGGGAACCGGTTTAAACAGATTGCGTCGTTGAATCGCCACGCTCAGGATTGCGCTCTGAACAAGCACGTAACTGAGCCAGTCGACAAGACGATTCGCAAGAACTACTGTCGAGTGTGTGGCATGAGCTTCCAGTACAAGAGCGCTTTGTTGGAGCATTGCGTCAGGCAACATACTAACAACGCCCCAAAACCGCCAGAACCGGACAAAGAAGATAAAAGTCAACTAAACGACACCAACCGTATTGTAGACAATATAGTCGACGATATTTTGTCCGCTGAAGACGACTATATGACTATGTCGACTCAGAACGAAATACATAACGTGTACAATCCAAACGATATAGATAATAACCCAGAAAACTTGATGCAAATAGAACTATTGAAAGAAATGAACCAGCTACACATATTAGATGGAGAACTGTTCTATAATGATATAGATTTCGACAGTATTCAACCGagtcatatatttaataataatacgaaCGATATGGATTATAGCACAGATAAAAATGGTGAAATACTCTTCGATTTTACTGATGGCGGCAAAAGTTTGGATCAAGATATTATGAATGCATTATTTCATGTTAAAACTGAATATTTGCCCGATGACTTACTAAACGCTCCCGAAGTAATAAATACAGCTCCTGAAAAAAGTAGCGAAATAGAAAATCCAGTATCAGTGAATGAATGTGCGACCATATTTGAAAGTGATGTCGATTTAGAAGCTAGCACTAATCTAGCTGCAAATTTGAACCAGCTAATTGGAGAGAACACTGTTCAGTACATTTCTACTGAAGATGATGACAcgtttataataagtttaaaaagtGAAATCGATGCTGCACAACTGACAGATATGTTAAATATAGGAGTAGAGTTAGTTAATGAAAAGGAAGATTATGTTTCTGAAATAGACAATTATCCTGTTAGCAATACTGAACCGATAGTTGTGAAGATTCAGGAGCCGCCTATGCGTATAGATTTGGGACCCGATGcgaaagagaataataataataaacaagttaaGATTAAAGTGAAGAAGTGTAAGAAAAGAGTGTTGTATGTGTGTAGAACGTGTAATAAGGTGTTCAGTAGGAAGGATAACTACAGGTCACATATTGCAACCCATGAGCCGTCGCTCCGCAGACACAAGTGTAGGATCTGCGGCGACCGCTTCAGCTACCGCTCCACGCTCAACAAACACTTGCGCGACCATCACACGCCGTGTGTGCTGCCGGCGCATGTGTGTCAACTGTGCGACAAGAGCTACCGCGCTGCGTGGATGCTGAAGGATCATCTGGATCGTGACCACGAGGGGCTGACGCCACATGCGTGTGAATACAAAGGATGCGGCAAGAGCTTCTTCAAGAAGTCCGACCTCAGCGTGCACAAGAGGTACCACACAGGCGAGCGTCCTTACATGTGTGACATCTGCAAGGGAGCATTCAAGCACGTGTCGCATCTGAAGCGCCACGAACGAGACGTCGACTGCACCAAACAGTAA
- Protein Sequence
- MDSNLPFFSLPFVDSESSDLFRQIRPQESGYDDLHSALPSHSALLGPDDVLAQFLSGDEPLEEPDLNGPTTLHCEICKKQFDNAKKYYGHLRVHSKDNLWVCDKCPNEKFSTKQQLMKHSLTHKPLEREWKCLQCSMSFEALWKLQQHLFAKHLDYKPHKCDQCGKAFHKLSDRKKHMDMHRDIKRHACSECKMRFKDKSNLNRHMLRHTGEKPYCCPGCGNRFKQIASLNRHAQDCALNKHVTEPVDKTIRKNYCRVCGMSFQYKSALLEHCVRQHTNNAPKPPEPDKEDKSQLNDTNRIVDNIVDDILSAEDDYMTMSTQNEIHNVYNPNDIDNNPENLMQIELLKEMNQLHILDGELFYNDIDFDSIQPSHIFNNNTNDMDYSTDKNGEILFDFTDGGKSLDQDIMNALFHVKTEYLPDDLLNAPEVINTAPEKSSEIENPVSVNECATIFESDVDLEASTNLAANLNQLIGENTVQYISTEDDDTFIISLKSEIDAAQLTDMLNIGVELVNEKEDYVSEIDNYPVSNTEPIVVKIQEPPMRIDLGPDAKENNNNKQVKIKVKKCKKRVLYVCRTCNKVFSRKDNYRSHIATHEPSLRRHKCRICGDRFSYRSTLNKHLRDHHTPCVLPAHVCQLCDKSYRAAWMLKDHLDRDHEGLTPHACEYKGCGKSFFKKSDLSVHKRYHTGERPYMCDICKGAFKHVSHLKRHERDVDCTKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01342457;
- 90% Identity
- -
- 80% Identity
- -