Sver005445.1
Basic Information
- Insect
- Shargacucullia verbasci
- Gene Symbol
- -
- Assembly
- GCA_947562105.1
- Location
- OX387309.1:2134710-2141351[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0013 0.1 13.4 4.6 3 23 253 274 240 275 0.93 2 10 0.024 1.8 9.5 0.1 3 23 297 318 295 318 0.94 3 10 0.0003 0.023 15.4 0.4 2 23 341 362 340 362 0.96 4 10 0.00067 0.051 14.3 0.1 1 23 366 388 366 388 0.98 5 10 9.7e-05 0.0074 17.0 0.1 1 23 393 416 393 416 0.94 6 10 7.2 5.4e+02 1.7 0.1 2 20 423 441 422 445 0.74 7 10 1.6e-05 0.0012 19.4 1.2 1 23 452 475 452 475 0.97 8 10 0.027 2.1 9.3 3.1 1 23 481 503 481 503 0.93 9 10 3.9e-06 0.0003 21.4 3.6 1 23 509 531 509 531 0.99 10 10 1.7e-05 0.0013 19.4 3.6 1 23 537 560 537 560 0.98
Sequence Information
- Coding Sequence
- ATGAATGCGAATAAGGGTAAAGGGCCTATTTTCGATCCCGGATTATGCCGATGTTGTGGAAATATGAAAAAGTGTCGTGTTTTGAACGTTGAATACGAGAGTTTGGGGCAGAAGGAGGTTTATTCAGACATGATAATGGACTGCTTCGGTTTACTGCTTTCTCATTTAGACGGTTCTCCATCAGAACGGCTTATCTGTGCGACCTGCGTCACACGGATACGTGACGCGTTGAATTTCCGTCGCCAAGTGCTCCGATGTGAAGAAGCTTTCTTGCAGATGAAGATATACGATTCGCAATGTGATGATACATTAGACAATCAAATAGATGCTTTAGTAGAATGCCCGCCCAAGGTTGAAGTGGAGATTGTAAAGACAGAACCTTTAGATATGGATGAACGGAGCGATGACGACAACTGTGCGGATGCGCTGGCGGATGCTCCAGATGATGACCCGAAGCCTGATCCCATGGACCAAGATTCTAACGATGACCTGCCTCTTAAACACCACATAACAGCCACTAAAAAGGACAGCACTATGCCAACAAAGAAGACGGAGATGGTCAAACCAGTGTTAAGGAATCATAGGCCAACGCCCGGGCTTTTACCACCAACAGTGACCAAAATGAAATTACCAATGTCGAAAGTACAACAGCTTATGCGAGAAAGAGACCCCACAtacatgacagagacgaacatactaacaatagtagaatattcatttgtgtgccctttcaaatgtaggcacaaccaccttctctgctactactgcggcgaaacattttcagacccaactctattgagacaacacacaacaaacacacaccatccaaagaaatttaaagtcaccgaacacaagaacatgataaaagtcgatttaacgagaatcgattgtcgattgtgcggggaaaaaatcgatgatttagacgagttcaaacgccacatcactagtgaacacaagaagaagtattatttcgattataaagactccgtgctgccgtttagattgacgcgggatgaattaaagtgtgctatttgtgacgtcatctttccgtattttcatgcgcttaacaaacacatgaatgaacatttcagtaactatgtgtgcgagacatgtggATTAGGTTTCGTCGACAACGGTCGTTTCGTGATGCATCAACAGCGTCACGAAGAAGGTGACTTCCCGTGTCCCGACTGCGGCAAAGTGTTTAAAGCTCAATATAACAGAGACTTACACATTGACCGCGTGCATCGCAAGCGAGGACGCGTGTACTGTCCCAAGTGTGACGTCAAATTGATGTCCTACCCGCAAAAACTGAAACATCTTGTTGAGGTCCATGGTGAGGAGCCTCTCAGTTTCGCTTGCACAATGTGTGATAGGGTGTTTGACACCCGACGTACACTCACCATACATAAACGGAAAGAACATCTCAAGGATTACAGgtatgaatgtcagtgctgcggtcaaaagttcttcacccggttcgcgctaaacaaccatatgcccacacacacgggcgagagaaacttcaaatgtaaagtctgtgagaagtgctacccgcgtttgaagactttaaaagaccatatgagaatacacacgaacgacagacggtatcgatgtcacgtgtgtgggcaggcctttattcagaactgcagtctgaaaggtcatatgaaaagccaacatccagagtatgagatgaggatgtag
- Protein Sequence
- MNANKGKGPIFDPGLCRCCGNMKKCRVLNVEYESLGQKEVYSDMIMDCFGLLLSHLDGSPSERLICATCVTRIRDALNFRRQVLRCEEAFLQMKIYDSQCDDTLDNQIDALVECPPKVEVEIVKTEPLDMDERSDDDNCADALADAPDDDPKPDPMDQDSNDDLPLKHHITATKKDSTMPTKKTEMVKPVLRNHRPTPGLLPPTVTKMKLPMSKVQQLMRERDPTYMTETNILTIVEYSFVCPFKCRHNHLLCYYCGETFSDPTLLRQHTTNTHHPKKFKVTEHKNMIKVDLTRIDCRLCGEKIDDLDEFKRHITSEHKKKYYFDYKDSVLPFRLTRDELKCAICDVIFPYFHALNKHMNEHFSNYVCETCGLGFVDNGRFVMHQQRHEEGDFPCPDCGKVFKAQYNRDLHIDRVHRKRGRVYCPKCDVKLMSYPQKLKHLVEVHGEEPLSFACTMCDRVFDTRRTLTIHKRKEHLKDYRYECQCCGQKFFTRFALNNHMPTHTGERNFKCKVCEKCYPRLKTLKDHMRIHTNDRRYRCHVCGQAFIQNCSLKGHMKSQHPEYEMRM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00908236;
- 90% Identity
- -
- 80% Identity
- -