Sver007915.1
Basic Information
- Insect
- Shargacucullia verbasci
- Gene Symbol
- Hr39
- Assembly
- GCA_947562105.1
- Location
- OX387283.1:12644044-12664088[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.042 3.1e+02 0.8 3.2 73 192 224 342 135 372 0.63 2 3 4.1e-08 0.0003 20.6 0.1 1 21 445 465 445 480 0.91 3 3 7e-64 5.1e-60 204.3 0.0 150 408 496 763 469 763 0.84
Sequence Information
- Coding Sequence
- ATGGTGATGAGCACCGCGATGAGCAGTGAGGGCGACGCGGTGAAGGTGGAGGGGGGACACGTGTCGGTCACCACTATCAGCATGTCAGGCCCGGAGACAAGTAACGGTCAGTTCTCGTACAGTTCGAGCGGCGTGCGCATCAGTGTGTCTTCAGTTCCTCATGATGAAGACTCCACTGACGCCGAGATCTCCAAGATCGACTTCACACAACATCAGTACGAGGTGAACATGCGTAACAAGAAGAAGCGTCCGTCCAGCGGCGCGCACTGCGAAATGACGAGCAATGAGCGAGAACGACCCATGTCGTGGGAGGGGGAGCTCTCCGACTCCGAGATGGTCATAGACACCAGTGTTAATAATGACGAAAACAGCAGCTCCCTGGATCTCCAATCGTCCAGAGATTCGATCGACACCCTCCGCAACGTGAGCATTAAGACTGAGCCGTTGAAAAGCGAGGGTTTCCAGGGTGTCGACGAGCAGCGCGTCCTCGACCTCAAGTACAGCGCGCCGCTGCAGCCACATCAGAGGAGCCTTAGCATGAACAGGATATCGGTGTTAACAGACGGCACGTCACTATCCCTGGCCCGGCGGCCGTCGTCCCCCACCAGCAGCGCCAAGTCTCTGGCGCTCAGCGACCAGGGGAGCGCGCCCATGCAGCACGCGGGGCTCGACCAAGTTCACAATCTGACCATCAAGAAGGAAACGCAGCTATCAGAATTAAAATGTGAACAATCAGTAGGCATGGACAAGCTGATCGGCGCGCTACACGGCTCCCCGCTCCTAGGAAGGCTACCGCGCGTGCAGTCCAGCGCCAGCACAGACTCCGCCGTGCACTCCATGTACACTCACAGTGTGTACAGTAGTCCGTCAGCCAGTCCCCGCGCGTCCCGGCACTACACGCCGTCGTTATCGCGCAACAACAGCGACGCGTCGCATTCCTCCTGTTACTCCTACAGCTCCGAGTTCTCGCCTACGCACTCGCCAGTACAGGGTCGCCATCCACAAGTGATGTACCGCGAGGCAGCGGCGGCGTACGATGGCACACATGATGACGAACCCGACGCTCCTGAAGATAGGCTACATCACCATCAGGGTATCAGCAGACAACAGCTTATTAACAGTCCCTGTCCGATCTGTGGCGACAAGATCAGCGGGTTCCACTACGGGATATTCTCGTGCGAGTCGTGCAAGGGTTTTTTCAAGCGCACCGTGCAGAATCGGAAGAACTACATGTGTTTGAGAGGGGGCAACTGTCCAGTCACCGTCACGACCAGGAAGAAGTGCCCCGCGTGTAGGTTCGACAAGTGTCTCGGGTGCGGGATGAAACTTGAAGCTATTAGAGAAGACAGGACCCGAGGAGGTCGTTCAACGTACCAGTGCTCATACACGCTATCGGGTGCAGCGTCTACCGGCTCGCTGCTGTCTGCGCATGCGCCTACTACGCTACGGCATGCCTCCAGTCTCACTTGTGTAAACGGCCCAGGGTCATACAGCAGCCGAGGGGAGTCCAGCAACAGTCAAGTTACACCAGATATACCGCCGTTATTACAGGAAATCATGGACGTGGAGCATCTTTGGCAGTACAACGAGTCTGAATTAAGCAGGCTTGGCAAGTCCACTGGCAGTCCGTCTGCGAACCCTCTGTTGGCAGCCAGCGGGATCACCGCGCACAACTCCAGTCCCGACTTCCTGGCAGACCTGTGCAATATCGCCGACCACCGGCTGTATAAGATCGTCAAGTGGTGCAAGAGCTTGCCGCTCTTTAAGAATATTTCGATCGACGATCAGATCTGCCTGTTAATCAACAGCTGGTGTGAGCTGCTAGTGCTGTCGTGCTGCTACCGCGGCGTGAGCACGCCGGGCGAGGTGCGCGTGGGAGGCGGCCGCGGCATCACGCTGCATCAGAGCGCTAAGTTGGGTTTGACGCCGTGTATAGAACGCATGCTGAGCTTCACCGATCACCTGAGGAGACTGCGGGTGGACCGATACGAATACGTAGCGCTCAAAGTCATCGTACTGCTCACTTCAGACGCGCCAGATCTGCGTGAAGTGGAGAAAGTACGAGCTTCCCAAGAAAAGGCGTTAGCGGCACTCCAAGCGTACATCGCGACGCACTCGCCTGGCACGCCTGCCAAGTTTGGAGAGTTGCTGTTACGTATACCTGAATTGCAGAGAACTTGCCAGTTCTTCATGCAAGTCGGAAAAGAAATGCTAAACCCAGCGAACATAAGCAAAGATGGCGACGGACCAAGCTTCAACCTGCTCATGGAATTGTTGCGTGGAGACCACTGA
- Protein Sequence
- MVMSTAMSSEGDAVKVEGGHVSVTTISMSGPETSNGQFSYSSSGVRISVSSVPHDEDSTDAEISKIDFTQHQYEVNMRNKKKRPSSGAHCEMTSNERERPMSWEGELSDSEMVIDTSVNNDENSSSLDLQSSRDSIDTLRNVSIKTEPLKSEGFQGVDEQRVLDLKYSAPLQPHQRSLSMNRISVLTDGTSLSLARRPSSPTSSAKSLALSDQGSAPMQHAGLDQVHNLTIKKETQLSELKCEQSVGMDKLIGALHGSPLLGRLPRVQSSASTDSAVHSMYTHSVYSSPSASPRASRHYTPSLSRNNSDASHSSCYSYSSEFSPTHSPVQGRHPQVMYREAAAAYDGTHDDEPDAPEDRLHHHQGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYMCLRGGNCPVTVTTRKKCPACRFDKCLGCGMKLEAIREDRTRGGRSTYQCSYTLSGAASTGSLLSAHAPTTLRHASSLTCVNGPGSYSSRGESSNSQVTPDIPPLLQEIMDVEHLWQYNESELSRLGKSTGSPSANPLLAASGITAHNSSPDFLADLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLVLSCCYRGVSTPGEVRVGGGRGITLHQSAKLGLTPCIERMLSFTDHLRRLRVDRYEYVALKVIVLLTSDAPDLREVEKVRASQEKALAALQAYIATHSPGTPAKFGELLLRIPELQRTCQFFMQVGKEMLNPANISKDGDGPSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00042698;
- 90% Identity
- iTF_00806824;
- 80% Identity
- iTF_01342312;