Sver003884.1
Basic Information
- Insect
- Shargacucullia verbasci
- Gene Symbol
- lov
- Assembly
- GCA_947562105.1
- Location
- OX387296.1:9892104-9894414[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-18 9.6e-16 57.5 0.0 1 44 59 102 59 103 0.96
Sequence Information
- Coding Sequence
- ATGGACTCATCGCTAGGGCTGTTTCCTCCGGGCATGGAGCACAAGATGTACCCACTGATGGACGTGGATCACCGCGCGCCGCCGCTTGACGCACAGCTTTTTACCAACGTTAAAAAGAAATGGCGACCGAAGGGTCAGCACAGCGCGCCGCGCGGCGGTCCACCTCGATCGTGGACAAACGCCGAGCTGACGGAGGCGTTGCAGCACGTGTGGAACAAAAAAATGACGACAAGCCAAGCCTCCAGAATCTTCGGTATCCCATACAACTCGCTGCTCATGTACGTGCGCGGGAAGTATGGAAAAAGCCTAAAGCTAGAGCAGCTCAGGAAAGACTGTATCGGCGGCCCACTGGACGTCCTAAATCTCAACTCCGGCAATAACAACAACAATCAACCCTCAGGCAAACACCACGACAAAGACGACCACTCAGGCCGACCGGCGAGCTCCGAGCCAGACATCGCCTCGAATCCCATGTTCAATCCATTCCAGCAAGGGTTTTACCCAGAGTTCCCGCCAGGATTTCCGATGCCGCTAAACATGCTGCATCTACTCCCGCCGAACGACAAAGCGAGGGAACTGTACCAGTCGATGCCGATGGCTCTGGACTCGCTGTCAGGGGTAACGAAAGAGGAGGATTGTAAGAGCGATAGGTCAAAGGAGAACTCAGCCGATGAGGAAGGAGACTCGTACCGCGCGCCCTCACACCCGTCGCATCCACCCGACAACCGCACGCTTCTGCATCACAACGGACAGGACTAA
- Protein Sequence
- MDSSLGLFPPGMEHKMYPLMDVDHRAPPLDAQLFTNVKKKWRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCIGGPLDVLNLNSGNNNNNQPSGKHHDKDDHSGRPASSEPDIASNPMFNPFQQGFYPEFPPGFPMPLNMLHLLPPNDKARELYQSMPMALDSLSGVTKEEDCKSDRSKENSADEEGDSYRAPSHPSHPPDNRTLLHHNGQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00651653;
- 90% Identity
- iTF_00162429;
- 80% Identity
- -