Sbem004414.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sesia bembeciformis
Gene Symbol
-
Assembly
GCA_943735985.1
Location
CALSEZ010000142.1:1063704-1089109[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 7.9e-05 0.0054 17.5 0.1 3 23 141 161 140 161 0.97
2 14 7.2e-07 4.9e-05 23.9 1.2 1 23 167 189 167 189 0.99
3 14 4.5e-06 0.00031 21.4 2.7 1 23 195 217 195 217 0.99
4 14 2.9e-06 0.0002 22.0 2.6 1 23 232 254 232 254 0.98
5 14 8.9e-06 0.00061 20.5 2.1 1 23 260 282 260 282 0.99
6 14 0.029 2 9.4 1.8 1 23 289 311 289 311 0.98
7 14 4.8e-07 3.3e-05 24.5 2.3 1 23 317 339 317 339 0.99
8 14 0.033 2.3 9.2 1.8 1 23 346 368 346 368 0.98
9 14 2e-06 0.00013 22.5 1.5 1 23 374 396 374 396 0.99
10 14 0.00037 0.026 15.4 0.7 1 23 403 425 403 425 0.99
11 14 2.2e-06 0.00015 22.4 1.9 1 23 431 453 431 453 0.98
12 14 0.0016 0.11 13.4 0.3 1 20 459 478 459 481 0.93
13 14 3.1e-05 0.0021 18.8 1.4 2 23 488 509 487 509 0.96
14 14 2.8e-06 0.00019 22.1 1.4 1 23 515 538 515 538 0.97

Sequence Information

Coding Sequence
ATGTTCGAGCAGCAGATCAAAGCTGAACCAATGAGTTTCTACTCATCCCATCCTCACATGCACCCGGGCCCCCCAACAATAGTCCGGTCTGAATCCGCCCACAGCATCATCAACATGAACCAACATCACCCACAAGAGGACTCCAAGGACAGCCTGATAATACAACAACAAGTACAACACCAGCAGGAGTTGATGGAACAGCACCAACAACAAGAAATGAGGGGAGATATGCAACAAGATGATGAGCTGAGCTTTAAAGGTATGGATGATGAAGGTGTTGAATTGGAGATGGATAGTCGAATGGACAGAATGGATAGTCGACAATGCTCTCAGGGTATGGGTGTGGATATGGGATCAGTGCAAACTAAAATGGAGGTGGCAAATGGTGGTCAGTCAACACCACGTTCAAAACCACAGGCCTGTAAGGTCTGTGGTAAAGTTTTATCATCCGCTTCATCATATTACGTCCACATGAAACTTCACTCTGGAAACAAACCCTTCCAGTGTACAGTGTGCGACgcagcgttctgccgcaagccgtacctggaggtgcatatgcgcacgcacacgggcgagcggcccttccagtgtgacctctgcctaaaacggttcacgcagaagtccagtctgaacacgcacaagcgcgtgcacacagatgaacacatgcgcgcgttgatggtgaaggaccgcccctacaagtgtgagctctgtcagatgcggttcacgcagagttccagcctcaaccggcacaagaaaattcatacgggcgagcggccctatcagtgcgacgcgtgtctcaagcgcttcacgcagaagtccagcctcaatatacataagaggacgcacacagtccagggcagaccgttccagtgcctgtcgtgccccgccgccttcacctgcaagcaatacctggagatacacacacgcacgcacaccggcgagcggccctaccagtgcgacatctgcctgaagcggttcacgcagaagtccagtctcaacatccacaagcggacccactcagttcaggggcgcccgttccagtgcctgcagtgcccggccgcgttcacctgcaagcagtacctcgagatacacaatcgcacgcacaccggcgagcgaccctaccagtgcgacgtgtgcctcaagagattcgcgcaaaagtcaacactcaacatacacaaacgaacgcacacagtgcaagggcggccgtatcagtgcatggagtgcccggcggccttcacttgcaagccgtacctggagatacacatgcgcacgcacactggcgaacggcccttcgagtgcgatgtatgttacaaacgcttcacccagaaatcgacgctcaacattcacaagcgaatccacaccgGTGAACGTCCATATGCATGTGATATTTGTCAAAAGCGTTTCGCTGTTAAGAGCTATGTGACGGCACACAGATGGTCTCACGTGGCGGATAAGCCGTTGAACTGCGACCGGTGCTCGATGACGTTCACGAGCAAGTCGCAGTTTGCGCTGCACATCCGCACACATTCCGCCACATCGTGTTACGAGTGCAGCGTTTGCGGACGCACCTTCGTTAGAGACAGCTATCTCATCAGACACCACAACCGCGTGCACCGCGAAAATCACAGCAACGTGTCGGCGAACAGCATCGGCACGATGGGCAGCTTGATCACGAACGCCAACGCTAACAACGGCAACTTCGACTCGCCCGGCGTTTGCGACCTTAGTTTCGTGCCAATGGTAAACCGGTACATGACGTCACAGGGCACACAGGTCTCCATGCAGGACACGCAGAGCAAGATGTCCGCCATGTCGCCGCAGTCCATCGCATCTATATCGTCCCCCCCTCCCCCGCACACGCCGACGCCACAGCCGATGTCGGCACAGATGCATCTCGCCGATTGA
Protein Sequence
MFEQQIKAEPMSFYSSHPHMHPGPPTIVRSESAHSIINMNQHHPQEDSKDSLIIQQQVQHQQELMEQHQQQEMRGDMQQDDELSFKGMDDEGVELEMDSRMDRMDSRQCSQGMGVDMGSVQTKMEVANGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYKCELCQMRFTQSSSLNRHKKIHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHSATSCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSANSIGTMGSLITNANANNGNFDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTQSKMSAMSPQSIASISSPPPPHTPTPQPMSAQMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00686557;
90% Identity
-
80% Identity
-