Sbem002748.1
Basic Information
- Insect
- Sesia bembeciformis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_943735985.1
- Location
- CALSEZ010000084.1:520219-542274[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.46 1.1e+04 -4.3 0.4 249 273 83 95 68 114 0.40 2 3 8.5e-79 2e-74 251.0 21.1 1 295 133 416 133 420 0.85 3 3 0.26 6.2e+03 -3.5 15.5 1 48 417 463 417 490 0.71
Sequence Information
- Coding Sequence
- ATGGGCAATAGATCTAAGTTTGCTACGCCCGACAACAGCGACGAGGAGACGGGAGAGCAGTTCACCGATGGTGATTTTGGTGATTCTGATGATGAAACACTCGTTATAGGAGATGAAGATTCTGCAACAAACCGTATCCCCGTAAATGAAACTGTAAACTTCGACGTAAACAAGACTAAAGTAGGAATAAACGGTGATGCAGACGATAATAAGTTGGATCGACATGCGAATAGTTCCAAAGATTCCGCCAAGGCGAATGGACATATAAACGAAACTAGTCAGCTTAATGATTTAAGCAATCAGAGCAATGGCGACAATACTGTTCTGGAGAGAAGAGATTCCCATGGCGAACAGAATCCGTCAATTGTTGGAATACTCGGCGATCAACAAAACCACGCGGAGCAGCGTCTGGCAGCGCGGCGCGCGGCACGGGCGGAGGCGCGCGACATTCGCATGCGCGAGTTGGAGCGACAACAGCGCGAGCAGGAAGACCATGCTGACAAGGCGTACGACATGATGTCAGAGACAGTTGGACGGCGAGGCGGCACACGACTGGCAGCCCTCAGCCCTGGTGGACTTCACTCACCGCGGCGGAGTTCGGAAGACTCCGCTGATGATACCTTCAGCATCAAAGATCTTAGGCACGAATTAAAAGAAGTGGAAGAGAAGTTCCGTAAAGCGATGATCCTGAACGCGCAGCTGGATAATGACAAAGCGGCGCTCGGCTACCAGCTAGAACTGCTCAAAGACAGAATAGAGGAGTTACATGAGGAGTACGCACAGTTACAGCGAGAACATAAAGAAAAATGCTCAGTGCACGAGCGTTTAAAACGCGAGCACGCATCATTAGAGCGTGAATTAACAGCTGCCCGTGATGCGGTACGTGCCAGAGACGCCGCCGCCTCCGCCGCTGGTTTCGCGTTCGTAGAGGCCTCTCTTGAAACAGTGCCAGAGGGACAGACTCCTCAGGGCTTCGGCACAGTGCCTCCATTAGCCTTGGTCTCACACGAGTCTGAACAGTTGCTGAATGATGCGGGAGAGGGAACACTTGACGTCCGGTTGCAGAAGCTGCTCAGCTCGAAGCTGTCCTTGGAGTCTGAGGTGCGCAAGCTGAAGCTGCAGCTGAACGAGGAGCGCGCGACGCGACACAACGGCATCACCAACCACCACGACCACGAGTACGAGAATGAATTGGAAACCCTCCGTAAGTCGGTAGCAGAAGCGAAAGGTCGCGCGGCGCGGGCAGAAGCCGAAGCAGCGCTTCAAGCGGCTGCAGTGGCGCGGCTTGAAGCGCAAGTAGTCAGGCTAAAGGCCAGGCAGGACCATCAGGACGAGCACGAGGAACAGCTGAAGCAGGAGAGACGACGATTGCAAAGAGAGGCGCGGGAAGCCCTTAATCGAGTAGAAGAACTGGAAACGGAAAACAATCATCTGACGAAACGTTTGGACAAACTCAAAAACGCCAAGTCTGCGCTCCTCAAAGACCTGTGA
- Protein Sequence
- MGNRSKFATPDNSDEETGEQFTDGDFGDSDDETLVIGDEDSATNRIPVNETVNFDVNKTKVGINGDADDNKLDRHANSSKDSAKANGHINETSQLNDLSNQSNGDNTVLERRDSHGEQNPSIVGILGDQQNHAEQRLAARRAARAEARDIRMRELERQQREQEDHADKAYDMMSETVGRRGGTRLAALSPGGLHSPRRSSEDSADDTFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSVHERLKREHASLERELTAARDAVRARDAAASAAGFAFVEASLETVPEGQTPQGFGTVPPLALVSHESEQLLNDAGEGTLDVRLQKLLSSKLSLESEVRKLKLQLNEERATRHNGITNHHDHEYENELETLRKSVAEAKGRAARAEAEAALQAAAVARLEAQVVRLKARQDHQDEHEEQLKQERRRLQREAREALNRVEELETENNHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -