Snon042395.1
Basic Information
- Insect
- Sesamia nonagrioides
- Gene Symbol
- -
- Assembly
- GCA_017933935.1
- Location
- JADWQK010002101.1:107188-109014[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.4e-07 0.00017 22.8 0.0 1 39 15 53 15 59 0.89
Sequence Information
- Coding Sequence
- ATGGTattcaaatataaaagaaaaactgcGAGAGCATCGTGGTCAGAAGAATCGCTAGAGCGAGCTACAAAATTGGTTAAAGAAGAAGGAAAATCTATAAATTCTGCcgcaaaaaaattaggaatTCCTTTTACTACTTTACATCGACACCTAAAATCAGGAAGTGTCTCGAAAAAATTGGGCAGATATATACCTGTTTTCACGCCAGAACAAGAGGAAGATCTGtgtgcatatttaaaaaaattagacAGTCTTTTCTTTGGATTGACTCGTTCAGAATTTTTAGATCTAGTGTTTGAGTATGccagaaaaaataatattactcatCCGTTTAAAAATGGCAAAGCTGGTGATGACTGGTTTGCTGGGTTTAAGCGCCGACACCCAGAAATTGTCCTACGAGCACCCGAACCGACATCATTGGCAAGAACTCGAGGTTTCAACAGGCCTCAGGtggaattattttataaaattttttgGGACTTAGTAGAAAAATACAAATTTGATGCGACTACAATTTATAACATGGACGAAACAGGTGTTAAGAGCAGCACGAGTCGACCGCCAAAAGTTTTATCGATAAAAGGTAAAAGGCAAGTTGGAGTAGTCAGCAGTGCCGAAAGAGGTCAACTTACCACTGTTATTTGCTGCTGTAATGCAGCTGGCACGTATGTTCCACCTTTTTTCATATTTGCCCGAAAAAGAATGCAAGAGAGGCTATTGGATGGCGCTCCTCCGGGCTCGCAAGCTACAGTCAGTGACAATGGTTGGGTAAACGGAGAAGCTTTTTTAAACTGGCTTCAATTTTTCGCTGATACAGTCCGTCCAAACGAAAACAGGAAGATACTACTACTGCTCGACAATCATGAGTCCCACAAATATTATCCAGCTTTGGAATTCGCAtcgaaaaataatattatatttttatcttttgcaCCCCACACCACGGATCGTATGCAACCACTGGATGTTGCCGTGTATGGACCGCTGGAAAAATATTTTGAGCAAGAGATAAATACATTTCAAAAATCACACCCAGGACGAATTGTGAACCAATATGACATGGCTAAATTGTTCGGAGGAGCATACGTCAAAAGCGCTTCAGTCCAGAATGCAGTAAATGGATTTAAGAAACCAGGAATATGGCCGTACGATCCGAAAGTTTTTGGAGATGAAGATTACGCTCCTTCAACAATGACTGATCGTCCTCTGAATGTAGCTCAAAGCTCTTTGGATGATACTCCATGCAACTCAGCATCATCTGTTGTACCCCACTCTCCCACAGACCTTGTATCAACACAGAATTTGATGACGGATCTTTCTGCAAAGGAAAACCCCGAACAATGTACAACACCTATACCTGATCCAATCCTGGAACAAGGACCGTTGCAAGCTCCTGTAGCAAATCTTACACCATTGCAGATCAGACCCATACCAACAATGGCTGCTCCCAAAACAAATCGCAAAAATAAGAGACAAAAATCGGAGATATTAACATCAACTCCAGTTAAAGCTGAGCAAGCTGCTaaatatataaaagtaaataaaaagaagACCAATATATCTGAATTAGCAAGTTCCAGCAAAATTAAGAAGAATAAGATAAAGAAGACTGAATTACCAGGTCACAGCCAAACTAAAAGGACAAAGACATCTTCCAAAGCTAAAACTAAAGctgatttattttgtttggtgTGTGCCGAGAAATATACTGAACCGCTTGTTGAAGATTGGATTCAGTGTAGCCAGTGCCAAAATTGGGCACACGAAAATTGTACATCATACGCAGGTGTTGGAAGTTATTTCTGCGATGAATGCGAAGactga
- Protein Sequence
- MVFKYKRKTARASWSEESLERATKLVKEEGKSINSAAKKLGIPFTTLHRHLKSGSVSKKLGRYIPVFTPEQEEDLCAYLKKLDSLFFGLTRSEFLDLVFEYARKNNITHPFKNGKAGDDWFAGFKRRHPEIVLRAPEPTSLARTRGFNRPQVELFYKIFWDLVEKYKFDATTIYNMDETGVKSSTSRPPKVLSIKGKRQVGVVSSAERGQLTTVICCCNAAGTYVPPFFIFARKRMQERLLDGAPPGSQATVSDNGWVNGEAFLNWLQFFADTVRPNENRKILLLLDNHESHKYYPALEFASKNNIIFLSFAPHTTDRMQPLDVAVYGPLEKYFEQEINTFQKSHPGRIVNQYDMAKLFGGAYVKSASVQNAVNGFKKPGIWPYDPKVFGDEDYAPSTMTDRPLNVAQSSLDDTPCNSASSVVPHSPTDLVSTQNLMTDLSAKENPEQCTTPIPDPILEQGPLQAPVANLTPLQIRPIPTMAAPKTNRKNKRQKSEILTSTPVKAEQAAKYIKVNKKKTNISELASSSKIKKNKIKKTELPGHSQTKRTKTSSKAKTKADLFCLVCAEKYTEPLVEDWIQCSQCQNWAHENCTSYAGVGSYFCDECED*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01209157;
- 90% Identity
- iTF_01024833; iTF_01024834; iTF_01024835; iTF_01024836; iTF_01024837; iTF_01338695; iTF_01338696; iTF_01338697; iTF_01340045; iTF_01024830; iTF_01024831; iTF_01024832; iTF_01338691; iTF_01401219; iTF_01401220; iTF_01401221; iTF_01401222; iTF_01401223;
- 80% Identity
- -