Snon018864.1
Basic Information
- Insect
- Sesamia nonagrioides
- Gene Symbol
- -
- Assembly
- GCA_017933935.1
- Location
- JADWQK010000959.1:11332004-11332627[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3e-09 1.6e-06 29.3 0.0 1 37 8 44 8 47 0.95 2 2 1.3 6.4e+02 1.8 0.0 31 44 151 165 150 166 0.88
Sequence Information
- Coding Sequence
- ATGCCGAAAATACCGCAATATACTAGAGAACAGTTAGATAATGCCTTAGAAGACATTAACCAAGGAATCCCAATAAGGGTGGCTGCAAAAAAATATGGAATACCGCGAGCAACTTTACAATTTAAGTTGAAGAATCCAGATAGCAAACATGAATTTGGTCCAAATCCATATTTGACTACTGAAGAGGAAAATCATTTAGAAGATTGGATCTGTGAGATGGGCAGAAGAGGATTATCAAAAGAGgataatcaaaataatttggaagTAGAAATTGAGGATGAAACTGAAATTGTAAGTCAAGAGAAAGAATCAACATTGAATGAAAACGAAAACTTTGAACCAAGAGATAAAGAAAGAGAGATAGAGATTACTATGACGGAAAATCAAGAGACAAGAGAATTGGATCAGAATGTACCATTAGGCCAAGTTAATGAAAAGACAGTTGATGGATCAACATTATctgaaaatagaattaaaagaaatacaaaCCTGGAAAATGCAAAGACtactataattattacaacAGAAGTACATGCACAACCCACCCATATTGCAAAAGAGAATACAATAGTCACTGAGATGCACAATAGGGTAAAAGATTTTGAACAaaatgattttgattaa
- Protein Sequence
- MPKIPQYTREQLDNALEDINQGIPIRVAAKKYGIPRATLQFKLKNPDSKHEFGPNPYLTTEEENHLEDWICEMGRRGLSKEDNQNNLEVEIEDETEIVSQEKESTLNENENFEPRDKEREIEITMTENQETRELDQNVPLGQVNEKTVDGSTLSENRIKRNTNLENAKTTIIITTEVHAQPTHIAKENTIVTEMHNRVKDFEQNDFD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01339977;
- 90% Identity
- iTF_01339978;
- 80% Identity
- -