Snon029777.1
Basic Information
- Insect
- Sesamia nonagrioides
- Gene Symbol
- -
- Assembly
- GCA_017933935.1
- Location
- JADWQK010001454.1:47825-48448[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3e-09 1.6e-06 29.3 0.0 1 37 8 44 8 47 0.95 2 2 0.89 4.5e+02 2.3 0.0 31 43 151 164 149 165 0.91
Sequence Information
- Coding Sequence
- ATGCCGAAAATACCGCAATATACTAGAGAACAGTTAGATAATGCCTTAGAAGACATTAACCAAGGAATCCCAATAAGGGTGGCTGCAAAAAAATATGGAATACCGCGAGCAACTTTACAATTTAAGTTGAAGAATCCAGATAGCAAACATGAATTTGGTCCAAATCCATATTTGACTACTGAAGAGGAAAATCATTTAGAAGATTGGATCTGTGAGATAGGTAGAAGAGGATTATCAAAAGAGgataatcaaaataatttggaagTAGAAATTGAGGATGAAACTGAAATTGCAAGTCAAGAGAAAGAATCAACATTGAATGAAAACGAAAACTTTGAACCAAGAGATAAAGAAAGAGAGATAGAGAATACTATGACGGAAAATCAAGAGACAAGAGAATTGGATCAGAATGTACCATTAGGCCAAGTTAATGAAAAGACAGTTGATGGATCAACATTATctgaaaatagaattaaaagaaATACACACCTGGAAATTGCAACGACTACTATAATTATTACAGCAGAAGTACATACACAACCCACCCATATTGCAAAAGAGAATACAATAGTCACTGAGATGCACAATAGGGTAAAAGATTTTGAACAaaatgattttgattaa
- Protein Sequence
- MPKIPQYTREQLDNALEDINQGIPIRVAAKKYGIPRATLQFKLKNPDSKHEFGPNPYLTTEEENHLEDWICEIGRRGLSKEDNQNNLEVEIEDETEIASQEKESTLNENENFEPRDKEREIENTMTENQETRELDQNVPLGQVNEKTVDGSTLSENRIKRNTHLEIATTTIIITAEVHTQPTHIAKENTIVTEMHNRVKDFEQNDFD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01339978; iTF_01339979; iTF_01339980; iTF_01339985;
- 90% Identity
- iTF_01339978;
- 80% Identity
- -