Sinf045621.1
Basic Information
- Insect
- Sesamia inferens
- Gene Symbol
- -
- Assembly
- GCA_037179545.1
- Location
- CM073948.1:5890248-5890886[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.6e-09 1.6e-06 29.3 0.0 2 36 16 50 15 58 0.89
Sequence Information
- Coding Sequence
- atggtaaataattataaaagaaaatccaATCGAAATTCCTGGGATGAAGCCAGCATGAAAAATGCAATCGAGAAAGTGGCAGCTGGAGAAATGGGCCTCAATAAGGCTTCTAATCAATTCCTGGTACCAAAGACTACTCTGAAGAGAAAATTAGAGAAATATAAGGCTACTCAAAATATTGATACAGCCACACATAAGAAACTGGGTAGATTTGAACAAGTTTTTACTAAGgctcaagagactgaattagcTACTTATGTGAAACAGAGGGAAAGTCGTTTGTTTGGATTAACCACGGAAAATCTAAAGAAGTTGGCATATGATCTAGCTGAGAGAAATAACATAAGTCACAATTTTGATACTTGCAAGAAGATGGCAGGTAGAATTTGGTTAGAAAACTTCTTAAAACGTAACCCAGATCTTAGCTTGCGTAAACCTGAACCAACATCTGCAGCCCGAGCAGCTGGCTTCAATCAAGTTGcagttaataatttttttgatttgctGTCACATGCAATTGAAACTTATCATCTGACTCcagataaaatttttaatgtaGATGAGACAGGAATCACAACAGTCCCCAAGAGTATATCAAGAATTATTGGCTCAAGAGGGAAAAACAAATCGGCTTATTAA
- Protein Sequence
- MVNNYKRKSNRNSWDEASMKNAIEKVAAGEMGLNKASNQFLVPKTTLKRKLEKYKATQNIDTATHKKLGRFEQVFTKAQETELATYVKQRESRLFGLTTENLKKLAYDLAERNNISHNFDTCKKMAGRIWLENFLKRNPDLSLRKPEPTSAARAAGFNQVAVNNFFDLLSHAIETYHLTPDKIFNVDETGITTVPKSISRIIGSRGKNKSAY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00709157; iTF_00937211; iTF_01338621; iTF_01338622;
- 90% Identity
- iTF_00709157;
- 80% Identity
- -