Smon020573.1
Basic Information
- Insect
- Sericinus montela
- Gene Symbol
- -
- Assembly
- GCA_029286605.1
- Location
- JAGSMR010000118.1:427576-438437[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0012 0.11 13.6 0.3 1 23 85 108 85 108 0.95 2 19 1.1 1e+02 4.3 0.1 2 23 134 156 133 156 0.92 3 19 0.0086 0.82 10.8 3.0 3 23 181 201 179 201 0.96 4 19 0.00073 0.069 14.2 0.5 1 23 205 227 205 227 0.97 5 19 0.0074 0.7 11.1 0.1 1 23 234 257 234 257 0.97 6 19 0.0012 0.12 13.5 1.3 2 23 265 287 264 287 0.95 7 19 1.1e-06 0.0001 23.1 0.9 2 23 293 315 292 315 0.97 8 19 0.53 50 5.2 1.0 1 23 321 344 321 344 0.87 9 19 8.6e-06 0.00082 20.3 1.6 1 23 350 373 350 373 0.98 10 19 0.051 4.8 8.4 0.9 1 23 448 471 448 471 0.93 11 19 0.21 20 6.5 0.0 2 23 498 520 497 520 0.91 12 19 0.081 7.7 7.8 1.1 2 23 544 565 543 565 0.96 13 19 0.11 10 7.4 0.0 1 23 569 591 569 591 0.89 14 19 0.0034 0.32 12.1 2.9 1 23 596 619 596 619 0.96 15 19 0.25 24 6.2 1.0 2 23 627 649 627 649 0.92 16 19 1.1e-05 0.001 20.0 0.7 2 23 657 679 656 679 0.96 17 19 0.0058 0.55 11.4 3.6 1 23 685 707 685 707 0.97 18 19 1.3e-06 0.00013 22.8 3.5 1 23 713 735 713 735 0.99 19 19 0.0002 0.019 15.9 1.4 1 23 741 764 741 764 0.98
Sequence Information
- Coding Sequence
- ATGAACGAGATGGAGATAATGGGAGCAGTATTAAATGAAACACGTGAATCTTCTGTTTGGGAAGAAGgCCTTTCCGGAGCGAAAAAGACCCGAAGACGGGTCATAAAGGAGGAAATCGAAGACGTGAACCATGTTAGTAAAAAAGTCTACCGCGAAAAGCATCTGCCCGAAATGCAGAAACAGTGGCACAACTTAACGACGTTGCTTAAGTACTCCAATGCCACGCCGTTCAAGGATAGGAATGACGCCGGTTACATTTGCGCCTATTGCTTCAAAACGTATCCCGATCCGGACGTTTTGAGGAACCACACCCAGTACGACCACGTTAAAGAAAAGCCGACGTACAAAGCTGGCTCGGGGATGAGCAGCTTCGTCGCTTTCCTCGACGTGGTCGACCTCAAGTGCACGATCTGCGAACAACCGATGGACTCCCTAAGGACTCTTATGGAGCATCTAGTCAAAGAGCACGATAAGAAGTATTACTTGGGCCTCACCGATTACTTCCAGCCGTTCAAACTCACCAACGAGCCGCAGATAAACTGTTGCCTCTGTAACGAGGTGTTTCACAATATGAAACTACTCATGCAACACATGAACGTACACTATAGGAACTTTATTTGCACGACTTGTGGCGCGGGTTTCGTGAACAGCTTTCGATTGAACCGACACGAGACGACGCATGGCAAGAAGAAGTCGAGTTTCCCTTGCAGACAGTGCGGTCAGGTGTTCGCCGCCGAATCGAAGAAGAAAGCCCACGTCAATACTGAACATAAAGGAATCGCCGGCGACAGCGTTTGTCAAATTTGCAAAGCGAGGTTCAAGAATTACTATCAGAAGACTCGTCACATGATGCAAGTGCACAACGTCGAGGGTATAAAATGCGACATGTGCGACAAGAAGTTCAACCTAAAATCGAATTTAATGCTTCACATGCGTAGCGTGCACTTGAAGGAGCGCCCGTACGAGTGTTCCGTTTGCAACATGGGCTTCTTCATAAAGCGCCACATGTTGGGCCATTACTTGGCGACGCACACAAACGAGAGGAAGTTTAAGTGCGACGTTTGCGGCAAAGCTTACGCTACGCAGAACAGCAGACGGAAGCACATGAAGAAGAACCACGGCATCGCAAAGAACAATGGGATCGGTGTACAACGTACCGTAAGCATCAAAATCGAAAAGCAATccttaaaaaaaggaaagagcAAGAAAGATACCGATGTGAAAGCGGAAAATAAAAACGATGCGTACAAAGGTAGGGAATTAGAGAAACATCGGAACAATATCAGGGAAATATTGCAATGCTCGAACGCTACGCCGATACGTTGCCACGGCGGCATAGGATACGCCTGCTGCTTTTGTGCCCAACAGTATCCAGATCCTAAGGATCTGAAGAAGCACACGTTGGAGGACCACGACGGTAAAGCGAAACGTAACTTCATGGAGGGAAAGATGATGTTCTCGTATCTCGTTAAGTTGGATATAACTTCACTGCAATGCACAATCTGCGAAACCAACATACAAACATTGGAGCAACTGATCCAACATTTGATTGACGTCCACGACAGAAAGTTCTATTCGGACATCAACAACCACATTGTCCCGTTCAGATTCGACGACGACACTTTATTGAAATGCGTTTACTGTATGAACACGTTTAACAAGTTCAAAGCGCTGCAGGAGCATATGAATTTACACTATCGGAATTACGTATGCGAGGTCTGCGATGCGGGATTCGTGAACAAGAACATTTTGTTGAATCACGCGGAGGGACACAAGAAAGGCACCTTCAAATGCGACTACTGCGATAAAATCTTCGACACGTACCGAAAGAAGAAGTCGCACGAGAAATCTGTCCATATACACTTGAACATGCTGAACAGGTGCGGCTATTGCAGCGAGAAGTTCAAAGACTACAGAAAGAAGCTCGACCACTTGGCAAAAGTCCACGGAGTCCGTTCCGTGACGTTGAAATGTAACGCATGCGACAAGACCTTCGACACCCAAACGGCACTAACTACGCACATAAAGCGCGACCATCTGTTGGAGCGTCGTCACGAGTGCAAAGTTTGCGATATGAAATTCTTCGTTACCCACGAGCTGAAAGAGCATATGGTGAAGCACACTGGCGTCAGGGATTTCAAATGCGAAGTGTGCCACAAGACGTACGCTAGGAGGAAAACGCTGAGGGAGCATATGCGGATTCATGCGGACGATAGGCGCTTCAAATGCGATTACTGCGGGCTCGCATTCGTGCAGAAGTGCAGCTGGCGCGGACACGTGCGCGTGAAGCACGGTGCGCAAGTGTAG
- Protein Sequence
- MNEMEIMGAVLNETRESSVWEEGLSGAKKTRRRVIKEEIEDVNHVSKKVYREKHLPEMQKQWHNLTTLLKYSNATPFKDRNDAGYICAYCFKTYPDPDVLRNHTQYDHVKEKPTYKAGSGMSSFVAFLDVVDLKCTICEQPMDSLRTLMEHLVKEHDKKYYLGLTDYFQPFKLTNEPQINCCLCNEVFHNMKLLMQHMNVHYRNFICTTCGAGFVNSFRLNRHETTHGKKKSSFPCRQCGQVFAAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMMQVHNVEGIKCDMCDKKFNLKSNLMLHMRSVHLKERPYECSVCNMGFFIKRHMLGHYLATHTNERKFKCDVCGKAYATQNSRRKHMKKNHGIAKNNGIGVQRTVSIKIEKQSLKKGKSKKDTDVKAENKNDAYKGRELEKHRNNIREILQCSNATPIRCHGGIGYACCFCAQQYPDPKDLKKHTLEDHDGKAKRNFMEGKMMFSYLVKLDITSLQCTICETNIQTLEQLIQHLIDVHDRKFYSDINNHIVPFRFDDDTLLKCVYCMNTFNKFKALQEHMNLHYRNYVCEVCDAGFVNKNILLNHAEGHKKGTFKCDYCDKIFDTYRKKKSHEKSVHIHLNMLNRCGYCSEKFKDYRKKLDHLAKVHGVRSVTLKCNACDKTFDTQTALTTHIKRDHLLERRHECKVCDMKFFVTHELKEHMVKHTGVRDFKCEVCHKTYARRKTLREHMRIHADDRRFKCDYCGLAFVQKCSWRGHVRVKHGAQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00204516;
- 90% Identity
- -
- 80% Identity
- -