Btha017307.1
Basic Information
- Insect
- Bhutanitis thaidina
- Gene Symbol
- -
- Assembly
- GCA_029286595.1
- Location
- JAGSMS010000040.1:1603615-1608934[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0014 0.089 13.5 0.3 1 23 75 98 75 98 0.95 2 19 0.17 11 6.9 0.1 2 23 124 146 123 146 0.90 3 19 0.01 0.65 10.8 3.0 3 23 171 191 169 191 0.96 4 19 0.00085 0.055 14.1 0.5 1 23 195 217 195 217 0.97 5 19 0.0086 0.56 11.0 0.1 1 23 224 247 224 247 0.97 6 19 0.0014 0.093 13.4 1.3 2 23 255 277 254 277 0.95 7 19 1.3e-06 8.2e-05 23.0 0.9 2 23 283 305 282 305 0.97 8 19 0.62 40 5.1 1.0 1 23 311 334 311 334 0.87 9 19 1e-05 0.00065 20.2 1.6 1 23 340 363 340 363 0.98 10 19 0.061 3.9 8.3 1.2 1 23 491 514 491 514 0.94 11 19 0.68 44 5.0 0.1 2 23 541 563 540 563 0.95 12 19 0.0015 0.095 13.4 1.0 2 23 587 608 586 608 0.97 13 19 0.2 13 6.7 0.0 1 23 612 634 612 634 0.88 14 19 0.024 1.5 9.6 3.0 1 23 639 662 639 662 0.96 15 19 0.12 7.6 7.4 1.5 2 23 670 692 670 692 0.93 16 19 1.5e-05 0.001 19.6 0.6 2 23 700 722 699 722 0.96 17 19 0.0059 0.38 11.5 4.7 1 23 728 750 728 750 0.97 18 19 1.8e-06 0.00012 22.5 1.6 1 23 756 778 756 778 0.98 19 19 0.00014 0.009 16.6 3.4 1 23 784 807 784 807 0.97
Sequence Information
- Coding Sequence
- ATGGACGGCCTGTCAAAActtgatttttcttttataggcCTTACCGGAGCGAAAAAGACCCGAAGAAGGGCGATAAAGGCGGAAATCGACGACGCGAACCACGTAAATAAAACGGTCCGCCGCGAAAAGCATCTGCCCGAGATGCAAAGACAGTGGCACAACTTAACGACGTTGCTAAAGTACTCCAATGCCACGCCCTTCAAGGATAGGAATGACGCCGGTTACATTTGCGCCTATTGCTTCAAAACCTATCCCGATCCGGACGTTTTGAGGAATCACACGCAGTACGACCATGTCAAAGAGAAGCCAACGTACAAAGCTGGCTCGGGGATGAGCAGTTTCGTCGCTTTCCTCGACGTGGTCGACCTCAAATGCACAATCTGCGAGCAGCCCGTGGATAGCCTCAGAACTCTCACGGAGCATCTAGTCGAAGAGCACGAAAAGAAGTATTACTTGGGCCTCACTGATTACTTCCAGCCCTTCAAACTCACTAACGAGCAGCAGATCAACTGCTGCCTTTGTAACGAGGTGTTTCATAACATGAAACTGCTAATGCAACACATGAATGTACACTATAGGAATTTTATATGCACGACTTGCGGCGCAGGATTCGTTAACAGCTTTCGGCTGAATCGTCACGAGACGACGCACGGGAAGAAAAAGTCCAGTTTCCCTTGCAGACAGTGCGGCCAGGTGTTCGCTGCCGAGTCGAAGAAGAAAGCTCACGTTAACACTGAGCACAAGGGCATAGCTGGCGACAGCGTTTGTCAAATTTGCAAGGCAAGGTTCAAGAACTATTATCAGAAGACGCGTCACATGATGCAAGTGCACAATGTTGAAGGTATCAAATGCGACATGTGCGACAAAAAGTTCAACCTCAAATCGAACCTGATGCTGCACATGCGAAGCGTGCACTTGAAGGAGCGCCCGTACGAGTGCTCTGTTTGCAACATGGGCTTCTTCATAAAGCGGCACATGTTGGGCCATTACTTGGCGACGCACACGAACGAGAGAAAGTTCAAGTGCGACGTGTGCGGTAAGGCTTACGCGACGCAGAACAGCAGACGGAAGCACATGAAGAAAAATCATGGTATCTCCAAAAACAATATGATCATTTCAAACGTGCCAAAGTATCGTCCGGAACTCGGTGATAATATAAACCCGGCTATAAACGTAACAGTACACGATAGTTGGAGTGAGAATGAAGATATAGTAAAAGAAGGAAGCGAAGAAGAAACTTCTATTGCTATGAGGGAACAAAGTGTACATCGTACCGTAAGCATCAAAATCAAAAAGCAAAGTGACACTTCCAATTCCTTAAAGAAAGGAAAGGGCAAGAAAGTGTCCGATCTGAAAGCGGACAGAAACGATGCGTACAAAGGGAGGGAATTAGAAAAACATCGGACCAATATCAGGGAAATCTTGCAATGTTCGAACGCGACCCCGATCCGTTGCCACGGTGGTATCGGATACGCCTGTTGCTTCTGTGCGCAACAGTATCCAGATCCTAAGGATTTGAAGAAACACACATTGCAAGAGCACGATGGCAAAGCGAAGCGTAAATTCATGGAGGGGAAAATGATGTTCTCCTATCTCGTTAAGCTCGACATAACATCATTGCAATGTGCCGTTTGCCAGTGCGATATACCATCGCTGGAGCAATTAATCGAGCATTTGATTACCGTCCACGACAGAAAGTTTTATTCGGAGATCAATAATCACATAGTCCCATTCCAATTCGACAATGATACGTTACTGAAGTGCGTGTATTGTACGAACTCATTCAACAAGTTCAAAGCGCTTCAGGAGCACATGAATATACATTATAGAAATTACGTTTGTGAGGTGTGCGACGCGGGCTTCGTGAACAGAAACATACTGTTGAACCACGCCGAAGGCCATAAGAAGGGCACGTTCAAATGCGACTTTTGCGAAAAAGTCTTCGACACGTATCGCAAGAAGAAGTCGCACGAGAAATCGGTCCATATACATCTGAATATGCTCAACAGGTGCGGCTATTGCAATGAGAAATTCAAGGATTATCGGAAGAAGCTCGACCATCTGTCCAAAGCCCACGGCGTCCGTTCGGTGATGCTGAAGTGCAAGGCGTGCGATAAAACTTTCGAGACCCAAACGGCACTGACGATACATATCAAGCGGGACCATCTGTTGGAGCGGCGGCACGAGTGCAAGTATTGCGACATGAAATTCTTCGTCACTCACGAGCTGAAGGAGCACATGGTGAAGCACACGGGGGTGAGGAACTTTGAATGTGAAGTTTGCCACAAGGCGTATGCGAGAAGGAAGACGCTCAGGGAACACATGCGGATACATGCGGACGATAGACGTTTCAAATGCGAGCATTGCGGCCAGGCGTTCGTGCAGAAGTGCAGTTGGCGCGGACATATGCGCGCGAAGCACGGAGAACAAGTGTAA
- Protein Sequence
- MDGLSKLDFSFIGLTGAKKTRRRAIKAEIDDANHVNKTVRREKHLPEMQRQWHNLTTLLKYSNATPFKDRNDAGYICAYCFKTYPDPDVLRNHTQYDHVKEKPTYKAGSGMSSFVAFLDVVDLKCTICEQPVDSLRTLTEHLVEEHEKKYYLGLTDYFQPFKLTNEQQINCCLCNEVFHNMKLLMQHMNVHYRNFICTTCGAGFVNSFRLNRHETTHGKKKSSFPCRQCGQVFAAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMMQVHNVEGIKCDMCDKKFNLKSNLMLHMRSVHLKERPYECSVCNMGFFIKRHMLGHYLATHTNERKFKCDVCGKAYATQNSRRKHMKKNHGISKNNMIISNVPKYRPELGDNINPAINVTVHDSWSENEDIVKEGSEEETSIAMREQSVHRTVSIKIKKQSDTSNSLKKGKGKKVSDLKADRNDAYKGRELEKHRTNIREILQCSNATPIRCHGGIGYACCFCAQQYPDPKDLKKHTLQEHDGKAKRKFMEGKMMFSYLVKLDITSLQCAVCQCDIPSLEQLIEHLITVHDRKFYSEINNHIVPFQFDNDTLLKCVYCTNSFNKFKALQEHMNIHYRNYVCEVCDAGFVNRNILLNHAEGHKKGTFKCDFCEKVFDTYRKKKSHEKSVHIHLNMLNRCGYCNEKFKDYRKKLDHLSKAHGVRSVMLKCKACDKTFETQTALTIHIKRDHLLERRHECKYCDMKFFVTHELKEHMVKHTGVRNFECEVCHKAYARRKTLREHMRIHADDRRFKCEHCGQAFVQKCSWRGHMRAKHGEQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01337898;
- 90% Identity
- -
- 80% Identity
- -