Smon007786.4


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sericinus montela
Gene Symbol
-
Assembly
GCA_029286605.1
Location
JAGSMR010000020.1:5113095-5127501[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 8.4e-05 0.008 17.2 0.1 3 23 132 152 131 152 0.97
2 18 7.6e-07 7.2e-05 23.6 1.2 1 23 158 180 158 180 0.99
3 18 4.7e-06 0.00045 21.1 2.7 1 23 186 208 186 208 0.99
4 18 3.1e-06 0.0003 21.7 2.6 1 23 223 245 223 245 0.98
5 18 7.6e-05 0.0072 17.3 0.6 1 23 260 282 260 282 0.98
6 18 3.7e-05 0.0035 18.3 2.6 1 23 297 319 297 319 0.98
7 18 2e-05 0.0019 19.2 0.8 1 23 334 356 334 356 0.99
8 18 0.00013 0.013 16.5 2.8 1 23 362 384 362 384 0.98
9 18 1.2e-06 0.00011 23.0 1.2 1 23 390 412 390 412 0.99
10 18 0.031 2.9 9.1 1.8 1 23 419 441 419 441 0.98
11 18 5.1e-07 4.9e-05 24.1 2.3 1 23 447 469 447 469 0.99
12 18 0.035 3.4 8.9 1.8 1 23 476 498 476 498 0.98
13 18 2.1e-06 0.0002 22.2 1.5 1 23 504 526 504 526 0.99
14 18 0.0052 0.49 11.5 3.3 2 23 534 555 533 555 0.96
15 18 3.7e-06 0.00035 21.4 1.1 1 23 561 583 561 583 0.98
16 18 0.0017 0.16 13.1 0.3 1 20 589 608 589 611 0.93
17 18 1.3e-05 0.0012 19.7 1.1 2 23 618 639 617 639 0.96
18 18 3e-06 0.00028 21.7 1.4 1 23 645 668 645 668 0.97

Sequence Information

Coding Sequence
ATGTTTGAACAACAAATAAAAGCAGAACCTATgagCTTCTACACTCCACATTCATATGTACACTCCGGTCCCCCTACAATAATCCGTTCGGACTCCAATCATGCAGTGTTAAGTATGAACCAACATCAACATCACCAAGAAGACTCTAAGGATAGCCTCATAATACAACAACAAATACAACATCAACAAGAGCTGCTGGAACAGCATCAACATCAACAGGACTTGCAAGCACAAGATGATGAGttaaGCTTTAAAGGAATGGATGATGAAGGAGTTGAAATGGACATGGATGGTCGGCAGTGTACGCAGGGAATGGAAGTGGACATGGGTTCTGTTCAAACAAAAATGGAAATATCCAATGGGGGACAAGTACCGAGATCAAAACCTCAAGCCTGTAAGGTTTGTGGTAAAGTGTTATCATCAGCATCATCTTATTACGTCCACATGAAGTTACACTCGGGAAATAAGCCATTCCAATGCACGGTTTGTGACGCTGCTTTTTGCCGCAAGCCGTACTTGGAAGTGCACATGAGGACGCACACTGGCGAGCGACCCTTTCAATGCGACCTCTGCCTAAAGCGTTTCACCCAGAAGTCCAGTCTCAATACGCACAAACGCGTCCACACCGATGAGCACATGCGCGCGTTGATGGCGAAGGAGCGACCCTACAAGTGCGAACTCTGTCAGATGCGCTTCACGCAGAGTTCCAGCCTCAACCGGCACAAGAAAATACACACGGAGGAACACAGACGCGCGCTGCTGGCTAAGGATCGTCCCTACCAGTGCGGCATCTGCTTTGTGCGATTCACCCAGAAATCGAGTTTGGGCCGGCACGGAAAAATACATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATCCGCTTCACTCAGAAGTCCAGCCTGGGTCGACATGGAAAGATACATACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAGTGCGACATCTGTGACAAGTGGTTCACCCAGAAGTCCAGCCTTGGCACTCATAAGCGTATACACACCGGCGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGGCGAGCGGCCCTATCAGTGCGACGCCTGTCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATATACGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCGGCCGCCTTCACCTGCAAGCAATACCTGGAGAttcacacgcgcacgcacaccgGCGAGCGCCCGTATCAGTGCGACATCTGCCTGAAGCGCTTCACGCAGAAGTCGAGCCTCAACATTCACAAGCGGACGCACTCAGTGCAGGGCCGCCCGTTCCAGTGCCTGCAGTGCCCGGCCGCCTTCACCTGCAAGCAGTACCTCGAGATCCACAACCGCACGCACACCGGCGAGCGCCCGTACCAGTGCGACGTGTGCCTCAAGAGATTCGCTCAAAAGTCAACACTCAATATACACAAACGAACGCACACAGTGCAAGGTCGGCCGTGTCAGTGCATGGAGTGCCCGGCGGCGTTCACTTGCAAGCGGTACCTGGAGATACACATGCGCACGCACACCGGCGAGCGCCCCTTCGAGTGCGAAGTCTGTTACAAACGCTTCGCGCAGAAATCTACTCTCAACATTCACAAGCGAATTCACACCGgtGAACGTCCATATGCATGTGATATTTGCCAGAAACGGTTTGCTGTGAAGAGTTACGTGACAGCGCATagGTGGTCGCACGTGGCCGACAAGCCGCTGAACTGCGAGCAGTGCTCGATGACGTTCACTTCCAAGTCTCAGTTCGCGCTGCACATCCGCACGCACTCGGCCGCCTCCTGCTACGAGTGCAGCGTGTGCGGACGCACCTTCGTGCGCGACAGCTACCTTATACGaCACCACAACCGCGTGCACCGAGACAAACACAGCAACATGTCGGCCAACAGCATCGGCACGATCAACAGCGTCACCAACAACTCCAACAATAGCAACTTCGACTCGCCCGGCGTTTGTGACTTGAGTTTTGTGCCGATGGTTAATCGCTATTTGGCATCGCAAGGCACGCAAGTGTCCATGCAGGACAGCAAAATGTCCGCCATGTCTCCCCAGTCCATCGCATCCATTTcgtcgccgccgccgccgcacacGCCCACGCCGCAGCCCATGCCCACGCCGCACACGCCCACGCCCACGCAGCCCATGCCCACGCCGCAGCCCATGCCCGCTGGGATGCGCCTCGCGGACTGA
Protein Sequence
MFEQQIKAEPMSFYTPHSYVHSGPPTIIRSDSNHAVLSMNQHQHHQEDSKDSLIIQQQIQHQQELLEQHQHQQDLQAQDDELSFKGMDDEGVEMDMDGRQCTQGMEVDMGSVQTKMEISNGGQVPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMAKERPYKCELCQMRFTQSSSLNRHKKIHTEEHRRALLAKDRPYQCGICFVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFIRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKWFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTGERPYQCDACLKRFTQKSSLNIHIRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPCQCMECPAAFTCKRYLEIHMRTHTGERPFECEVCYKRFAQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCEQCSMTFTSKSQFALHIRTHSAASCYECSVCGRTFVRDSYLIRHHNRVHRDKHSNMSANSIGTINSVTNNSNNSNFDSPGVCDLSFVPMVNRYLASQGTQVSMQDSKMSAMSPQSIASISSPPPPHTPTPQPMPTPHTPTPTQPMPTPQPMPAGMRLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00010401;
90% Identity
-
80% Identity
-