Smon018513.1
Basic Information
- Insect
- Sericinus montela
- Gene Symbol
- -
- Assembly
- GCA_029286605.1
- Location
- JAGSMR010000084.1:4244486-4259021[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.9e-11 1.1e-07 32.0 0.0 4 39 168 204 165 208 0.89 2 4 9.2e-13 2.5e-09 37.3 0.3 2 39 220 257 219 260 0.92 3 4 1.8e-14 4.9e-11 42.7 0.0 4 45 277 319 274 319 0.96 4 4 4.6e-19 1.3e-15 57.4 0.1 1 43 326 369 326 370 0.96
Sequence Information
- Coding Sequence
- ATGCCCGGATACGAAGCATGTCACGTGAAATGCGAACCGCCATCAGATGGAGAAGATAGCAACTCACAAATCTATTTACAAAACcagCTGCCTTCTTCGGAATTGCTCACGGTTAAAGTAGAAGCCGCTGACCGGACAGAAGACGATGCATCGTCACATATTTTGCATCATTTGCAGGTGGGGGGAGGGCTGGAGCTgacgccgcccgcgccgcccgcgcccgtcGCCACGCCGGTCAGTGCGCGCCGCGGCCCGCCGCCCTGCGCCTCGCCAGACACCCTGGAGACCCTCGAGCCTGCCCGGACACAACCGGGCACTACACTTCTTGACAGACAAATGCAGTTGCTTAGTTCCAGTGACGTGGACACGGATTTTGCACCGCTCCTGTCTGTAAAGGACGAGCCGCTGTCTGAAGGGGAGCAACAGCCGGGCAGCGAGGAGGCGGGCGAGGCGGCGGAGgagggcgcgggcgcgggcgggccCAAGTCCTGGGCGCCGCGGGACATGGAGCGCGCGCTGCAGGCCCTGCGCGACCGCCGCATGAGCCTCACCAAGGCGTCTGCGACTTACGGTATCCCGTCGACCACGCTGTGGCAGCGCGCGCACCGGCTGGGCATCGACACGCCGAAGAAGGACGGCGGCGCCAAGAGCTGGAGCGACGCGGACCTGCGcgccgcgctgcacgcgctgcggGCCGGCGCGCTCTCCGCCAACAAGGCCAGCAAGGCCTACGGCATCCCCAGCAGCACCCTCTACAAGATCGCACGGCGCGAAGGTATCCGCCTCGCCGCGCCGTTCAACGCAGCGCCGACGTCGTGGCGCCGCAGCGACCTGCAGCTCGCGCTCGCCGCCATCCGCTGCGGCGCCGCGTCCGTGCAGCGCGCCGCGGCGCAGTTCGGGATCCCCAccggtaCGCTGTACGGAAGGTGTAAGAGGGAGGGCATCGAGTTGTCACGGTCAAATCCCACACCTTGGTCCGAAGACGCGATGGGTGAAGCGTTGGAGGCTGTGAGggTTGGTCAAATGTCCATCAATCAGGCTGCAATTCACTACAACTTACCGTACTCTTCTCTGTACGGTCGGTTCAAACGATGCAAATACCAGGcacaaGGTCTACTGCCAGTGCAGCAATCAGATATGCAGAAAAACCCAGAAGCAGAGCATCAAAGTCAACATCAGAACCAGGAATCACAGTCATACTATCACTCCTTACCTCCTCATGCGGTTCATAACCTGGCTGAGGACCAAACAAACCTGCAAATACCGTACAGCCAACTATTGGGTGAAGTTCATGAGACAATGCATGGTCATATGTTCCTTCAGGAACAATACAGTGGGCAGGGGCTTTATTACACTCAAAATTGCTACAGTGGAGTCGCCACTAGTTGA
- Protein Sequence
- MPGYEACHVKCEPPSDGEDSNSQIYLQNQLPSSELLTVKVEAADRTEDDASSHILHHLQVGGGLELTPPAPPAPVATPVSARRGPPPCASPDTLETLEPARTQPGTTLLDRQMQLLSSSDVDTDFAPLLSVKDEPLSEGEQQPGSEEAGEAAEEGAGAGGPKSWAPRDMERALQALRDRRMSLTKASATYGIPSTTLWQRAHRLGIDTPKKDGGAKSWSDADLRAALHALRAGALSANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWRRSDLQLALAAIRCGAASVQRAAAQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQAQGLLPVQQSDMQKNPEAEHQSQHQNQESQSYYHSLPPHAVHNLAEDQTNLQIPYSQLLGEVHETMHGHMFLQEQYSGQGLYYTQNCYSGVATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00957878;
- 90% Identity
- -
- 80% Identity
- -