Smon016639.1
Basic Information
- Insect
- Sericinus montela
- Gene Symbol
- Unr
- Assembly
- GCA_029286605.1
- Location
- JAGSMR010000066.1:888943-915005[-]
Transcription Factor Domain
- TF Family
- CSD
- Domain
- CSD domain
- PFAM
- PF00313
- TF Group
- Beta-Scaffold Factors
- Description
- In molecular biology, the cold-shock domain (CSD) is a protein domain of about 70 amino acids which has been found in prokaryotic and eukaryotic DNA-binding proteins. When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees Celsius, a 4–5 hour lag phase occurs, after which growth is resumed at a reduced rate.During the lag phase, the expression of around 13 proteins, which contain cold shock domains is increased 2–10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.1e-15 1.9e-11 44.2 0.0 2 65 108 170 107 171 0.95 2 13 0.00024 2.2 8.8 0.0 17 58 202 243 189 251 0.78 3 13 1.2e-18 1.1e-14 54.7 0.2 2 65 261 320 260 321 0.96 4 13 0.00019 1.8 9.1 0.0 31 65 396 431 395 432 0.89 5 13 0.00024 2.2 8.8 0.0 17 58 463 504 450 512 0.78 6 13 1.3e-18 1.2e-14 54.5 0.3 2 65 522 581 521 582 0.96 7 13 0.014 1.3e+02 3.1 0.0 40 65 647 674 629 675 0.85 8 13 5.5e-12 5e-08 33.3 0.2 2 51 688 734 687 749 0.95 9 13 0.034 3.1e+02 1.9 0.0 43 64 827 850 820 852 0.88 10 13 9.5e-10 8.7e-06 26.1 0.1 1 31 871 899 871 906 0.94 11 13 0.27 2.4e+03 -1.0 0.0 35 57 1008 1031 1002 1040 0.70 12 13 0.3 2.7e+03 -1.1 0.0 40 53 1100 1113 1096 1120 0.81 13 13 7.9e-14 7.2e-10 39.2 0.0 3 65 1129 1191 1127 1192 0.88
Sequence Information
- Coding Sequence
- ATGTCCAGTAATCCTCAGTGGAAAATGTTCCAGCCGCCAGATTCACACTCCTCCCCATTGCAGGATATTTTAGATCTTCAGCATACCAATATGCAAAACAAGCAAGGTTTTCGAACTGGTACTTACAGCAGTGAGTATCCAAGTTCACCGAGAGATAGTTTTAATAATGTGAACAAGTCTGGTGGAGGAACCAGATATCCCCTTGGTAATTATAACTTGGACGCATGCCCAATGGGTGACTCAGTTGGTGCCTTCTCCTCAAGCTCCACTAACAATTCCAATTCACAATACGATTCTATGAACTGTCCAGCTATCCGAGAAACTGGTATAATTGAAAAACTACTGcacTCATATGGATTCATACAATGTTGCGAAAGGCAAGCGCGATTGTTCTTTCACTTCAGCCAGTTCAGTGGTAATATTGAACATCTGAAAATAGGTGATCCAGTGGAATTTGTAATGAGTTATGACAGGCGCACCGGAAAACCCATAGCCTCGACCGTTACAAAGATTGCTCCGGAAGTGGTATTAAGTGAAGCACGAGTAACAGGTACAGTGACCACAGAAGTGAAAGGTGAGGGCTCCGGAGACAATACTGGAAGAATTTCTTACGAGAATAGAGGTGAATGCTTCTTCTTGCCTTACACCAAAGATGATGTTGAGGGCAATGTCACATTACATACCGGTGATGCAGTAAGCTTTCAGATAGCTACCAACCAGAGGGGCACGTTGGGCGCCTGTCATGTTCGCTTCGAAAATCCTGCACATCCAGTTAAATATCACGGTGTAGTGTGCTCGATGAAAGAAAACTTTGGATTCATCGAGAGGGCTGATGTTGTGAAAGagattttctttcattattcaGAGGCAAAGACCAAAGAGGAGTTGGCCTTAGGAGACGATGTCGAATTTATTATTCAGACCAGAAACGGTAAAGAGGTGGCCTGTAATATAACGAAACcgccgagtggttcggtagtGTTTGAGGATGTGAGCCCTGAGATTATGAGGGGTCAGGTGTTGAAGCCCCTTGAGCGTGGTAATGTGGCGCGCGTGCCGCAGAACGATCCGCCCTCGGTAGGATTCGATATCGCGCTGCCGACCATTCCGAGGTGGAGGTACCGTTCGGCGATAAGGATCAGGGTGGCGAATTCACTTTACGCCATGGGGACTGGGTACAATTCCAGCCAGTTCAGTGGTAATATTGAACATCTGAAAATAGGTGATCCAGTGGAATTTGTAATGAGTTATGACAGGCGCACCGGAAAACCCATAGCCTCGACCGTTACAAAGATTGCTCCGGAAGTGGTATTAAGTGAAGCACGAGTAACAGGTACAGTGACCACAGAAGTGAAAGGTGAGGGCTCCGGAGACAATACTGGAAGAATTTCTTACGAGAATAGAGGTGAATGCTTCTTCTTGCCTTACACCAAAGATGATGTTGAGGGCAATGTCACATTACATACCGGTGATGCAGTAAGCTTTCAGATAGCTACCAACCAGAGGGGCACGTTGGGCGCCTGTCATGTTCGCTTCGAAAATCCCGTACATCCAGTTAAATATCACGGTGTAGTGTGCTCGATGAAGGAAAACTTTGGATTCATCGAGAGGGCTGATGTTGTGAAAGagattttctttcattattcaGAGGCAAAGACCAAAGAGGAGTTGGCCTTAGGAGACGATGTCGAATTTATTATTCAGACCAGAAACGGTAAAGAGGTGGCCTGTAATATAACGAAactgccgagtggttcggtagtGTTTGAGGATGTGAGCCCTGAGATTATGAGGGGTCAGGTGTTGAAGCCCCTTGAGCGTGGTAATGCGGCGCGCGTGCCGCAGAACGATCCGCTCCCCGGTAGGATTCGATATCGCGCTGCCGACCATTCCGAGGTGGAGGTACCGTTCGGCGATAAGGATCAGGGTGGCGAATTCACTTTACGCCATGGGGACTGGGTACAATTCCAGGTTGCGACAGATAGAAGGGACCAGCTTAAGCGTGCTACTAATATAACATTACTAGAAGAATCCTTTAATGTTTCCGGCGAAAGGCGGGAGCAGGGCGTGGTCTGCTCTCTCCGCGAGGGTTTCGGCTTCATCCGATGCGTAGATAGAGAGCAGACTATGTTCTTCCACTTTGCCGAGGTCCTGCGTCTGGGTCACGAGCTCAGCGTGGGAGATGAGGTCGAGTTCACAGTGGATCCGGTGACGACTTTCTCCAATATGAACACGCGTCAGTCGGCGATACGTATAAAGCACCTGCCGCCTGGGACGGTTCAGTTTGAGACCTTGGTGGAGCGAGGGGTCCGTGGCGTTGTGACTAAGGAGGCGCAGCTGCATTCCTCCTCGTCCTCATCGAGCCCAACCAGGAAACCGTCTGCCGATTACAACGGTCTCATCACGGCCCAAATCAATGGAGTGAAGAAGACGATAGCGTTTACAGCGAAGAAATGCGAGTCCAAGATGCTGCCACGTGTCGGAGATAAAGTGACATTTGACCTGTATCAGGTGAAGCGGACCAAGGAACTGGTCGCGATGTCGGTGCAAGTCCAACACAGCCTCACCAACGGCAGCGCCACCAACGGTAACACCAGCAGCCGTCCCATAATGCAGGGCTTCATAGCGGCCCTGAAGGACGGCTTCGGATTCATAGAGACGGCTGATCACACCAAGGAAGTGTTCTTCCATTTCAGTCCACCAATGGGTGAGGCCATGGGGCTAACGGAGCGGTACGACCCCCGCCAGATTCGCGGGACAGATAGCATGGCTAACCAAAATATCGTCTTGCTCCGCGCCTCCACCTCGGCTGTAGAGAGAAAGGAGATCACCAACGCCACAGACGCAAACACTCCGCACTCCACAGTCTTCCATCAAACATCCGAAGTAGGCTGCCCAAGCGCACTTACCGCAGTCAGGCCGGCCATGTTACTAAACCCACCGCCACGACATGTCGGGAACCAGTTCGGGGAAAAGAAAGACAGTCTCTTCACCATCAATACCTGTTGCAGTAACCTGGAGGGCAGTCCCGATGGTCTCGAGTTGGGAACCGAAGTGGAATACTCCCTGGGCCGCGTGAACGGCTCGGGGGGCGGCTGCGCCAGCGCCGAGTTTGTGCGCGTGCTGGCCAAGGGCACTATACCGGTGGCCAAGTCCCTGGACCCGCCCGTCAACGGCACCGTGACTAGGACTCTGCGCGCCCTTAACCCCGATCAGGCGCAGTATTCCGGCCTGATACAAATCGAAGGCGGGACTTCGTACGAATTCGGCATCATGGGACTGGCGTGCAAGCGCGAGATACTGCAAGTGGGGGATCCTGTCACGTTTCAGGTGGATGTCGAGGGTCGGGCTACTAACATAGTGCCGATAAGGAAGAAACGGCGCGCCACCGTGGACGCCATCAAAGGCGGTTTCGGGTTCCTGTCCGTCGAGGCGGAGGACAGCCGGCGGCTGTTCTTCCACATGTCGGAGGTGCGCGGCAACCCGTCGGAGCTTCAGCCGGGGGACGCGGTCGAGTTCGTCATGCTCACGAACCAGAGGAACGGCAAGTCGTCCGCCTGCAACGTCGTCAGGATCAGTGTTCCCTTGAACCACACTCCCCAACTGGCACAGCAACGCTCGCCCCGGGCGTGTTCCGTTTTCGTAACTGGGGGTAGCGTGACGAGCTCGGCGCGTGTTGCAGCGGCAAGACGAGCGGCAAGCGGTGTGAGCGCCCGGAGCGGCTGCTCGCGCGGCTGCGCACCGCCTCGCTGGAGGAGCCGGGCGCGCCGCGGGTGGTGgtcgcgcgcgcgccgcgcgggccCGACGGCAGCCGCGGCTTCCGTCCGCGCCGCCCGCTCGCCGGTCAGTCAGTCAGTCCGCGGTGGTACACCGGGCGCGCACACGtccacacgcacgcacgctcaCTGCTCACTGAACACGCACGCAACGCCCCGGCACGTACTGCACGCACACATTGACACGCATGTGCGTACGTACACGTGTACGCGCACGTACCGCTCCGGCGCGTACGGCACGCGCACATCAACGTACACGTATGCAAGTATACACACACACTCATTCGCACATGTGAACGCACTCATACACAGACTGATTCGCACGCACACGCCGACACCCACGCACACTAACACGCACGTACCCCGGCACTTGCACATGCACGCATTGACGTATACGTAA
- Protein Sequence
- MSSNPQWKMFQPPDSHSSPLQDILDLQHTNMQNKQGFRTGTYSSEYPSSPRDSFNNVNKSGGGTRYPLGNYNLDACPMGDSVGAFSSSSTNNSNSQYDSMNCPAIRETGIIEKLLHSYGFIQCCERQARLFFHFSQFSGNIEHLKIGDPVEFVMSYDRRTGKPIASTVTKIAPEVVLSEARVTGTVTTEVKGEGSGDNTGRISYENRGECFFLPYTKDDVEGNVTLHTGDAVSFQIATNQRGTLGACHVRFENPAHPVKYHGVVCSMKENFGFIERADVVKEIFFHYSEAKTKEELALGDDVEFIIQTRNGKEVACNITKPPSGSVVFEDVSPEIMRGQVLKPLERGNVARVPQNDPPSVGFDIALPTIPRWRYRSAIRIRVANSLYAMGTGYNSSQFSGNIEHLKIGDPVEFVMSYDRRTGKPIASTVTKIAPEVVLSEARVTGTVTTEVKGEGSGDNTGRISYENRGECFFLPYTKDDVEGNVTLHTGDAVSFQIATNQRGTLGACHVRFENPVHPVKYHGVVCSMKENFGFIERADVVKEIFFHYSEAKTKEELALGDDVEFIIQTRNGKEVACNITKLPSGSVVFEDVSPEIMRGQVLKPLERGNAARVPQNDPLPGRIRYRAADHSEVEVPFGDKDQGGEFTLRHGDWVQFQVATDRRDQLKRATNITLLEESFNVSGERREQGVVCSLREGFGFIRCVDREQTMFFHFAEVLRLGHELSVGDEVEFTVDPVTTFSNMNTRQSAIRIKHLPPGTVQFETLVERGVRGVVTKEAQLHSSSSSSSPTRKPSADYNGLITAQINGVKKTIAFTAKKCESKMLPRVGDKVTFDLYQVKRTKELVAMSVQVQHSLTNGSATNGNTSSRPIMQGFIAALKDGFGFIETADHTKEVFFHFSPPMGEAMGLTERYDPRQIRGTDSMANQNIVLLRASTSAVERKEITNATDANTPHSTVFHQTSEVGCPSALTAVRPAMLLNPPPRHVGNQFGEKKDSLFTINTCCSNLEGSPDGLELGTEVEYSLGRVNGSGGGCASAEFVRVLAKGTIPVAKSLDPPVNGTVTRTLRALNPDQAQYSGLIQIEGGTSYEFGIMGLACKREILQVGDPVTFQVDVEGRATNIVPIRKKRRATVDAIKGGFGFLSVEAEDSRRLFFHMSEVRGNPSELQPGDAVEFVMLTNQRNGKSSACNVVRISVPLNHTPQLAQQRSPRACSVFVTGGSVTSSARVAAARRAASGVSARSGCSRGCAPPRWRSRARRGWWSRARRAGPTAAAASVRAARSPVSQSVRGGTPGAHTSTRTHAHCSLNTHATPRHVLHAHIDTHVRTYTCTRTYRSGAYGTRTSTYTYASIHTHSFAHVNALIHRLIRTHTPTPTHTNTHVPRHLHMHALTYT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -