Scos032593.1
Basic Information
- Insect
- Scrobipalpa costella
- Gene Symbol
- nfxl1
- Assembly
- GCA_949820665.1
- Location
- OX463315.1:11855023-11857494[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1 4.4e+04 -7.8 5.6 15 19 134 138 133 138 0.81 2 20 0.032 1.4e+03 0.7 0.4 4 10 169 175 168 175 0.96 3 20 6.4e-07 0.028 15.7 15.3 4 19 187 202 185 202 0.94 4 20 0.86 3.8e+04 -3.9 0.9 6 18 227 231 226 232 0.49 5 20 1.5e-07 0.0065 17.7 12.8 1 19 237 255 237 255 0.93 6 20 0.38 1.7e+04 -2.8 2.2 6 10 280 284 279 284 0.83 7 20 1.3e-09 5.7e-05 24.3 12.5 1 19 290 308 290 308 0.99 8 20 8.1e-07 0.035 15.4 18.3 3 19 345 361 344 361 0.93 9 20 0.5 2.2e+04 -3.1 1.8 5 10 384 389 384 389 0.93 10 20 2.1e-06 0.09 14.1 18.6 1 18 395 412 395 413 0.97 11 20 4e-10 1.7e-05 25.9 14.4 1 19 422 440 422 440 0.99 12 20 0.0011 48 5.3 4.2 9 19 488 498 486 498 0.88 13 20 0.0029 1.3e+02 4.0 6.2 4 12 510 518 508 518 0.90 14 20 0.17 7.6e+03 -1.7 3.6 14 18 547 551 547 552 0.87 15 20 0.09 3.9e+03 -0.8 0.1 7 12 567 572 567 574 0.83 16 20 3e-06 0.13 13.5 6.1 1 11 588 598 588 599 0.98 17 20 0.29 1.3e+04 -2.4 1.1 15 18 613 616 612 617 0.82 18 20 1.9e-05 0.85 10.9 13.8 4 18 630 645 628 646 0.83 19 20 0.24 1e+04 -2.1 1.2 5 10 663 668 663 668 0.93 20 20 1.1e-05 0.49 11.7 12.6 1 18 687 705 687 706 0.88
Sequence Information
- Coding Sequence
- ATGTCGCGTAATTATCGCGATGCGGCCGCTAAGCTGCAACAAAACGTCCAGCGCCACTTGCAGGAGATGAAAGAGTTGTCCTCGTCTGATGATGAAGACCCTTACGAGTCCAACGTCCTGGAGAACGTCTTCAGGAGCTACTGTGGCGGCGGCGGAGACTCGCAGCTTCTAAACCGCACCAAAAACCTTCTAGAAGAAGCGATATGCGGCCGCGCGGTCACCTGTCTTATTTGCATTGGTTCTATCAAGAGAGCAGACGCCATATGGACTTGTGAACACTGCCACTGCTACTTCCACATATCCTGTATCCAGAAATGGGGCAACGACTGCGTCAGCGTCAAACCAAATGAAATTCAGGCTGCAATTAGTGTTTATGTAGCTAAAAAAGTCGAGTGGTGCTGTCCAAAGTGTCGCCAGTCGTACATAAAGGAGCAAATACCTCGTAAATATAGATGTTATTGTGGCAAGACTGATGACCCGCCAGTACATCCCTGGTTGATACCGCATTCCTGCGGAGAGGTATGTCAAAAGAGGATTTCTATTGGTGGTCACTGTGTTCATCAGTGCCTGCTGTTGTGTCACCCCGGACCATGTCCTCCATGCCCGCAGACCGTTAACGGCACATGTTATTGTTCAAAGGAGATAAAACTAGTAAGATGTAGCTCTAATAAGTGGTCATGTGGAAAACCCTGTAAGAAACGATTGCTGTGCAATTCTCATATGTGTGAAAATGAATGCCATGAAGGTGATTGCCCTCCGTGCAGCTACACAAGCCTGCAACAGTGTCAGTGTGGCGCTGAGAAAATCAAGAGACCTTGCAATGATGTGAAATGGCAGTGTCAAAAACCATGCAACAAACCATTTGCTTGCGGGTACCATAAATGTGATAAAATATGCCACTCCGGCAGCTGCGGTTCCTGCCCTAATTCTGGTATGAGGTCTTGTCCTTGTGGTGCTAATGAAAGATATGTCCAATGTCCTGATTATATAGAAACCTGTCTAGGTACTTGTAATAAGAAGCATGAAGACTGTGAACATAGTTGTCCAGAAAAATGCCATAAAGGCCCTTGTCCACCGTGCCAAGTTCTGATCCAGAAGAAGTGTTATTGTGAGACGCATGAAAGATCTCTACCATGCAGCAAAGAATTTAAATGTGAATCAAAATGTAGAGGTACTAGATTGTGTGGCAAACATCCTTGCGCAAAGAAATGTTGTAATGGTAATTGCCCCCCTTGTGAGAAAATTTGTGACAAGCAGCTTCAATGTGGCAGACATAAATGTACCACAGTTTGTCATCGTGGGCCATGCTATCCTTGCCCCAGAGAATCTAAGGTTACATGCCGATGCAAAGAAACTTACGTCACTGTACCTTGTggtagagaaaaacatgtgaaaCCACCCAAATGTAATCTGCCTTGCAAGATCAAGTATAAATGTGGACATGTTGATGAGAACAAACATTCCTGCCATTTTGGAGACTGCCCATTGTGCAAGGCAATTTGTGAAAAACCATATCTAAAATGTGATCATAATTGCAAAGCAGTTTGCCACAAATATGTTCCAGTTGTATTTAAACAGGTAGAAAAACCTGCGACGCCATGGGAGGTGCAACCCCCAAAGACCAAGATTATGGCTCTTGATTGTCCACCTTGTGACACACCCGTGCCTGTTATTTGTTTTGGAGAACATGAGACAGAGAAGCAGCCTTGCCACTCGGCTACTCGCAGACCTTGCGGCCGAGAGTGCGGGAAACCTTTGGCTTGTGGGAACCACTCTTGTACTCAACTCTGTCATCTTTATCAGCCTGATCCTAATTATCCAAATGTGCCTTATAGTTGTAGGCCATGTTACAGAGAATGCCAAGTACCCCGTCCAGTGAAATGTGCACATAAATGTGAAAAACGTGCTTGTCACACAGGAGAGTGTCCTCCGTGTGAAATCTTAGAGCGCATTCATTGCCATTGCGGATTAACAGAGTTGTATTTACGTTGCAAAGAGCTATGCATAGCTTCAGAAGAGATGTTATCTTGTAAGCAGCAGTGCCCTAAGAATTTAGAATGTGGCCATCGCTGCAAAAACAATTGCCATCCTGGAAAATGTGAGAATCAAGTTTGTACGAAAAAAACTAAAGTTCACTGTCCATGTGGTCACATTAAGAAGGAAGCTCCATGCAATTTAGTAAAGAAAGGAGAAGTGAACATAGTTTGCAATGAGAACTGTGAGGCTAAGAAGGCAGCAATCAAAttagagaaagaaaaagaaatgcaaAGACAGAAACTTCTTGAACAAGAAAAGAATAGAAGAGAGTTAGAAGAATATGAATGGAAGTTGAGtggaaaaaagaagaaatacaaggaaaagaaagttgTTATCCAGGAAGATAACAggaattttattcaaaagtaTTGGATTCTGATTGTTTCCACTTTTGTTGCAATTATTGCcggtatttattatatatttaatgttTGA
- Protein Sequence
- MSRNYRDAAAKLQQNVQRHLQEMKELSSSDDEDPYESNVLENVFRSYCGGGGDSQLLNRTKNLLEEAICGRAVTCLICIGSIKRADAIWTCEHCHCYFHISCIQKWGNDCVSVKPNEIQAAISVYVAKKVEWCCPKCRQSYIKEQIPRKYRCYCGKTDDPPVHPWLIPHSCGEVCQKRISIGGHCVHQCLLLCHPGPCPPCPQTVNGTCYCSKEIKLVRCSSNKWSCGKPCKKRLLCNSHMCENECHEGDCPPCSYTSLQQCQCGAEKIKRPCNDVKWQCQKPCNKPFACGYHKCDKICHSGSCGSCPNSGMRSCPCGANERYVQCPDYIETCLGTCNKKHEDCEHSCPEKCHKGPCPPCQVLIQKKCYCETHERSLPCSKEFKCESKCRGTRLCGKHPCAKKCCNGNCPPCEKICDKQLQCGRHKCTTVCHRGPCYPCPRESKVTCRCKETYVTVPCGREKHVKPPKCNLPCKIKYKCGHVDENKHSCHFGDCPLCKAICEKPYLKCDHNCKAVCHKYVPVVFKQVEKPATPWEVQPPKTKIMALDCPPCDTPVPVICFGEHETEKQPCHSATRRPCGRECGKPLACGNHSCTQLCHLYQPDPNYPNVPYSCRPCYRECQVPRPVKCAHKCEKRACHTGECPPCEILERIHCHCGLTELYLRCKELCIASEEMLSCKQQCPKNLECGHRCKNNCHPGKCENQVCTKKTKVHCPCGHIKKEAPCNLVKKGEVNIVCNENCEAKKAAIKLEKEKEMQRQKLLEQEKNRRELEEYEWKLSGKKKKYKEKKVVIQEDNRNFIQKYWILIVSTFVAIIAGIYYIFNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00844998;
- 90% Identity
- -
- 80% Identity
- -