Basic Information

Insect: Scrobipalpa costella
Gene Symbol: -
Assembly: GCA_949820665.1
Location: OX463317.1:9963926-9968839[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 0.077 1.7e+03 0.5 0.0 19 36 21 38 18 44 0.80

2 22 0.0034 73 4.8 0.0 15 36 43 64 39 68 0.86

3 22 0.02 4.4e+02 2.3 0.0 16 36 57 77 49 81 0.74

4 22 0.025 5.4e+02 2.1 0.0 17 36 71 90 65 94 0.82

5 22 0.026 5.7e+02 2.0 0.0 17 36 84 103 78 108 0.83

6 22 0.021 4.7e+02 2.3 0.0 16 36 109 129 103 135 0.80

7 22 0.032 7.1e+02 1.7 0.0 17 36 123 142 118 146 0.82

8 22 0.041 9e+02 1.3 0.0 17 36 136 155 130 159 0.82

9 22 0.052 1.1e+03 1.0 0.0 17 33 149 165 144 172 0.83

10 22 0.1 2.3e+03 0.1 0.0 19 36 177 194 163 199 0.74

11 22 0.0065 1.4e+02 3.9 0.0 17 37 201 221 196 225 0.85

12 22 0.024 5.2e+02 2.1 0.0 16 36 213 233 208 237 0.82

13 22 0.023 5.1e+02 2.1 0.0 15 36 238 259 233 263 0.82

14 22 0.02 4.3e+02 2.4 0.0 16 36 252 272 244 277 0.74

15 22 0.059 1.3e+03 0.9 0.0 18 33 267 282 263 290 0.83

16 22 0.12 2.6e+03 -0.1 0.0 20 36 295 311 283 315 0.76

17 22 0.0065 1.4e+02 3.9 0.0 17 37 318 338 313 342 0.85

18 22 0.053 1.2e+03 1.0 0.0 17 36 331 350 327 353 0.80

19 22 0.095 2.1e+03 0.2 0.0 21 36 348 363 339 367 0.82

20 22 0.0074 1.6e+02 3.7 0.0 17 37 357 377 353 382 0.85

21 22 0.0069 1.5e+02 3.8 0.0 17 37 370 390 366 394 0.85

22 22 0.05 1.1e+03 1.1 0.0 17 33 383 399 378 413 0.83

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	0.077	1.7e+03	0.5	19	36	21	38	18	44	0.80
2	22	0.0034	73	4.8	15	36	43	64	39	68	0.86
3	22	0.02	4.4e+02	2.3	16	36	57	77	49	81	0.74
4	22	0.025	5.4e+02	2.1	17	36	71	90	65	94	0.82
5	22	0.026	5.7e+02	2.0	17	36	84	103	78	108	0.83
6	22	0.021	4.7e+02	2.3	16	36	109	129	103	135	0.80
7	22	0.032	7.1e+02	1.7	17	36	123	142	118	146	0.82
8	22	0.041	9e+02	1.3	17	36	136	155	130	159	0.82
9	22	0.052	1.1e+03	1.0	17	33	149	165	144	172	0.83
10	22	0.1	2.3e+03	0.1	19	36	177	194	163	199	0.74
11	22	0.0065	1.4e+02	3.9	17	37	201	221	196	225	0.85
12	22	0.024	5.2e+02	2.1	16	36	213	233	208	237	0.82
13	22	0.023	5.1e+02	2.1	15	36	238	259	233	263	0.82
14	22	0.02	4.3e+02	2.4	16	36	252	272	244	277	0.74
15	22	0.059	1.3e+03	0.9	18	33	267	282	263	290	0.83
16	22	0.12	2.6e+03	-0.1	20	36	295	311	283	315	0.76
17	22	0.0065	1.4e+02	3.9	17	37	318	338	313	342	0.85
18	22	0.053	1.2e+03	1.0	17	36	331	350	327	353	0.80
19	22	0.095	2.1e+03	0.2	21	36	348	363	339	367	0.82
20	22	0.0074	1.6e+02	3.7	17	37	357	377	353	382	0.85
21	22	0.0069	1.5e+02	3.8	17	37	370	390	366	394	0.85
22	22	0.05	1.1e+03	1.1	17	33	383	399	378	413	0.83

Sequence Information

Coding Sequence: atgatctctgcAGAGTGGTTCTCCCCGCAAGAGGGGCTTTTCCCACATACAGTCGTCCACAGTGTGGACGAACAGAGCGCAACATTCCCAGTCGTCCACAGGGTGGACGAACAAACCGCAACATTCCCAGTCGTCCGCAGTGTGGATGAGCAGAACGCAACATTCCCAGTCGTCCACAGTGTGGATGAACAGAACGCAACATTCCCAGTCGTCCACAGTGTGGATGAACAGAACGCAACATTCCCAGTCGTCCACAGTGTGGATGAACAGAACGCAACATTCCCAGTTGTCCACAGTGTGGATGAACAGAACGGAACATTCCCAGTCGTCCACAGTGTGGATGAACAGAACGCAACATTCCCAGTCGTCCACAGTGTGGATGAACAGAACGCAACATTCCCAGTCGTCCACAGTGTGGATGAACAGTACGCAACATTCCCAGTCGTCCACAGTGTGGATGAACAGAACGCAACATTCCCAGTCGTCCACAGTGTTGATGAACCGAGCGCAACATTCCCAGTCGTCCACAGAGTGAATGAACAGAACGCAACATTCCCAGTCGTCCCCAGTGTGGATAAACAGAACGCAACATTCCCAGTCGTCCACAGTGTTGATGAACAGAGCGCAACATTCCCAGTCGTCCACAGTGTTGATGAACAGAGCGCAACATTCCCAGTCGTCCACAGTGTGGATGAACAGAACGGAACATTCCCAGTCGTCCACAGTGTGGATGAACAGAACGCAACATTCCCAGTCGTCCACAGTGTGGATGAACAGAACGCAACATTCCCAGTCGTCCACAGTGTGGATGAACAGAACGCAACATTCCCAGTCGTCCACAGTGTTGATGAACCGAGCGCAACATTCCCAGTCGTCCACAGAGTGAATGAACAGAACGCAACATTCCCAGTCGTCCCCAGTGTGGATAAACAGAACGCAACATTCCCAGTCGTCCACAGTGTTGATGAACAGAGCGCAACATTCCCAGTCGTCCACAGTGTTGATGAACAGAGCGCAACATTCCCAGTCGTCCACAGAGTGGATGAACAGAATGCAACATTCCCAGTCGTCCACAGTGTGGATGAACAGAACGCAACATTCCCAGTCGTCCACAGTGTTGATGAACAGAGCGCAACATTCCCAGTCGTCCACAGTGTGGATGAACAGAGCGCAACATTCCCAGTCGTCCACAGTGTGGATGAAATGAACGCAACATTCCCAGTCGTCCACAGTGTGGATGAAATGAACGCAACATTCCCAGTCGTCCTCAGTGTAGACGAGCCGAGACCAGCGCAGTTGGGTAAACCCGTAGTAAAATCCATACTGTTTGATGGACCTATCGACGCATTGTGCCAAGAAGACAACATGTga
Protein Sequence: MISAEWFSPQEGLFPHTVVHSVDEQSATFPVVHRVDEQTATFPVVRSVDEQNATFPVVHSVDEQNATFPVVHSVDEQNATFPVVHSVDEQNATFPVVHSVDEQNGTFPVVHSVDEQNATFPVVHSVDEQNATFPVVHSVDEQYATFPVVHSVDEQNATFPVVHSVDEPSATFPVVHRVNEQNATFPVVPSVDKQNATFPVVHSVDEQSATFPVVHSVDEQSATFPVVHSVDEQNGTFPVVHSVDEQNATFPVVHSVDEQNATFPVVHSVDEQNATFPVVHSVDEPSATFPVVHRVNEQNATFPVVPSVDKQNATFPVVHSVDEQSATFPVVHSVDEQSATFPVVHRVDEQNATFPVVHSVDEQNATFPVVHSVDEQSATFPVVHSVDEQSATFPVVHSVDEMNATFPVVHSVDEMNATFPVVLSVDEPRPAQLGKPVVKSILFDGPIDALCQEDNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -