Scos038195.1
Basic Information
- Insect
- Scrobipalpa costella
- Gene Symbol
- -
- Assembly
- GCA_949820665.1
- Location
- OX463322.1:8930059-8932008[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.8e-06 0.00052 21.5 1.0 2 23 168 190 167 190 0.94 2 13 1.6e-05 0.0018 19.9 1.9 2 23 198 220 197 220 0.95 3 13 0.081 8.8 8.2 1.3 2 23 227 249 226 249 0.92 4 13 1.6e-05 0.0017 19.9 0.1 2 23 257 279 256 279 0.96 5 13 1.8e-05 0.002 19.7 0.7 2 23 287 309 287 309 0.95 6 13 0.00046 0.05 15.3 0.6 1 23 316 339 316 339 0.95 7 13 5.6e-06 0.0006 21.3 2.1 2 23 345 367 344 367 0.94 8 13 0.00018 0.019 16.6 0.7 1 23 382 405 382 405 0.95 9 13 9.2e-05 0.01 17.5 0.5 3 23 415 436 414 436 0.97 10 13 3.2e-05 0.0035 18.9 0.9 2 23 442 464 442 464 0.97 11 13 3.7 4e+02 3.0 5.0 2 19 472 489 471 494 0.90 12 13 2e-07 2.2e-05 25.9 3.4 1 23 501 523 501 523 0.99 13 13 5.8 6.3e+02 2.4 5.5 1 23 529 552 529 552 0.94
Sequence Information
- Coding Sequence
- ATGGAGCAAAATGAAATGCATATAAAGAACCCAATCAAATTAGAGATAGAATTCGAAAACAATGCACCAAATTATGATCATTCTATCTTCAATATTAGTGGAGATATTGCACAGTTCCCAGAAACTAATATTCAACAATCATATCCCGCTATAGAATCAGTTTTGCTACCTCAGCTGAACAACTTAAAACATGATCAGCCCAATTATGATGATATCATCCAAACTAGTGAAGATATTCAATATCTACAGGAGATGGTTGTGCAACCGTATCCAGAAATACCAATAGAACCAGCAACACAACTGGAACCGTCCTATAGTATATCAAATGATATTCTACCGTTAAAAGTAGAAATTAAAGTCGAAGATGGGGTCATAGAGCACACTCAGGACCCGGTGCAATTATTTAAAGAGGACCTAGGACCCCCTCTCATCACCAAACCATGCTTTACCATAAATGATATACAAGAAAAAGTCTACGAAAATGGTCGTAAGAACAGAATCAAATGCCCAATCTGTGGACATGACTTCAAAAATAGAGCCAATTTGAAGAATCATTTGAATTTCATACACGCTAAAGATGATGCAATGGTTGAGTGCAACGAATGCTTCCGTACATTTAAATCTAAGGCTCATTTACGCACTCACATCTCCTCGGTTCATGTGGCAGTTAAGGAAGTCAAATGTCTGCAATGTGAGAAAACATTCTTGAACGAGAAGAAGTTGAAGAATCACCTTTTCTATGCTCACCCTAAGCCAGAAGACAATGTTGTCTGCGAGATCTGCAATAAAGCGTACAAAAGCAACCTGAACTTAAAGATTCATATAAGGCAAGTTCATCCTTCAGCGAACCGGATGGCTGTTTGCCAGGTATGCAACAAAACCTTCAAAAGCGAAATGTTATTGCAAAGACACATCAAATGGAGTCACCCGGAAGATGGAATGACATACCGCTGCCCAGAATGTGGACGGACCTTACCATCTTTACAGTGCTATCAAAAGCACATTGCAAACGTCCATTTGAATTCCGCAACCCGCTGCGGTATTTGCGAAAAGACATTTAAAACACAAAAGAACCTAGAACGGCATGTGATGCATGTCCACGAGGGTCAAAAACCGCCACCAAAGAATTACAAACTTGGCAATTTCAAATGCTTGGAATGCGACAAGTTTTTTTCATCTCAAACTGCATTGGATTGGCATTTCGAGAGAATACATTTGGAGAACAGAAAACAGGAGAGCTTCTGCCAGATATGCGATAAAGAGCTGTCCGATTATCAGAGCCTGAAACGACACATGGAAACGGTTCATTCCGAAGAGGCAGCCACGTGCCCGGAATGCAATAAGACATTTAAATCCTTCATCAGTGTACAGAGACATATCAAAGTGACTCATGCAACATCTGATAAAACAGTAGTATGCGAAATGTGCCAAAAAACCTTCAAATGTTTAATGCATTTAAGAATTCACTGTCACGCGGTCCATCCAAAAAACCAGGGATTATTCACTTGTGACATTTGCCAGAAAATCTTCACTTCAAAGAAATACCTACAGAAACATCAAAGGACTCACATTACCGAGAAGAAATTCCAATGTGATATATGCTACAAATTCTATAGATGTATAACGgatgttaataaacataaaaagcGGTACCATGTCACAATCCTGCAAGCTGAGGACGCTGCAACAGTTACCGAGAGTATTTTACCAGACGTACATGGTGGTACAGAGATATTACCAGATGTAGAAAGTGACACAGAGATTTTACCACATGTAAAACAAGGTGGTACAGAGATTTTACCAGATGTAAAGGGAGATACAGAGATTTTACCAGATGCAAAAGGAGATACAGAGATTTTACCAGATGTAAAACGTGAAACAGAGATTTTACTAGATGTAAAAAGTGAAACAGAGATTTTACTAGATGTAAAAAGTGAAAGTAAGATTTAG
- Protein Sequence
- MEQNEMHIKNPIKLEIEFENNAPNYDHSIFNISGDIAQFPETNIQQSYPAIESVLLPQLNNLKHDQPNYDDIIQTSEDIQYLQEMVVQPYPEIPIEPATQLEPSYSISNDILPLKVEIKVEDGVIEHTQDPVQLFKEDLGPPLITKPCFTINDIQEKVYENGRKNRIKCPICGHDFKNRANLKNHLNFIHAKDDAMVECNECFRTFKSKAHLRTHISSVHVAVKEVKCLQCEKTFLNEKKLKNHLFYAHPKPEDNVVCEICNKAYKSNLNLKIHIRQVHPSANRMAVCQVCNKTFKSEMLLQRHIKWSHPEDGMTYRCPECGRTLPSLQCYQKHIANVHLNSATRCGICEKTFKTQKNLERHVMHVHEGQKPPPKNYKLGNFKCLECDKFFSSQTALDWHFERIHLENRKQESFCQICDKELSDYQSLKRHMETVHSEEAATCPECNKTFKSFISVQRHIKVTHATSDKTVVCEMCQKTFKCLMHLRIHCHAVHPKNQGLFTCDICQKIFTSKKYLQKHQRTHITEKKFQCDICYKFYRCITDVNKHKKRYHVTILQAEDAATVTESILPDVHGGTEILPDVESDTEILPHVKQGGTEILPDVKGDTEILPDAKGDTEILPDVKRETEILLDVKSETEILLDVKSESKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01337077;
- 90% Identity
- iTF_01337077;
- 80% Identity
- iTF_01337077;