Scos038195.1
Basic Information
- Insect
- Scrobipalpa costella
- Gene Symbol
- -
- Assembly
- GCA_949820665.1
- Location
- OX463322.1:8930059-8932008[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0033 5.8 8.3 1.4 13 41 163 188 158 191 0.87 2 12 0.0078 14 7.1 1.1 11 43 191 220 187 221 0.84 3 12 0.033 57 5.1 0.8 17 44 226 250 223 250 0.89 4 12 7.7e-07 0.0014 19.9 1.0 6 44 245 280 239 280 0.91 5 12 0.0035 6.2 8.2 0.3 15 43 284 309 281 310 0.77 6 12 0.00094 1.7 10.0 3.2 16 43 343 367 331 368 0.89 7 12 3.5 6.2e+03 -1.4 0.2 15 29 380 394 374 405 0.79 8 12 0.00078 1.4 10.3 0.6 12 44 408 437 398 437 0.78 9 12 0.53 9.3e+02 1.2 0.8 14 28 438 452 436 464 0.84 10 12 0.32 5.6e+02 1.9 3.0 12 27 466 481 456 491 0.84 11 12 0.066 1.2e+02 4.1 1.2 12 29 496 513 487 520 0.81 12 12 0.29 5.1e+02 2.0 2.7 5 25 514 537 513 540 0.80
Sequence Information
- Coding Sequence
- ATGGAGCAAAATGAAATGCATATAAAGAACCCAATCAAATTAGAGATAGAATTCGAAAACAATGCACCAAATTATGATCATTCTATCTTCAATATTAGTGGAGATATTGCACAGTTCCCAGAAACTAATATTCAACAATCATATCCCGCTATAGAATCAGTTTTGCTACCTCAGCTGAACAACTTAAAACATGATCAGCCCAATTATGATGATATCATCCAAACTAGTGAAGATATTCAATATCTACAGGAGATGGTTGTGCAACCGTATCCAGAAATACCAATAGAACCAGCAACACAACTGGAACCGTCCTATAGTATATCAAATGATATTCTACCGTTAAAAGTAGAAATTAAAGTCGAAGATGGGGTCATAGAGCACACTCAGGACCCGGTGCAATTATTTAAAGAGGACCTAGGACCCCCTCTCATCACCAAACCATGCTTTACCATAAATGATATACAAGAAAAAGTCTACGAAAATGGTCGTAAGAACAGAATCAAATGCCCAATCTGTGGACATGACTTCAAAAATAGAGCCAATTTGAAGAATCATTTGAATTTCATACACGCTAAAGATGATGCAATGGTTGAGTGCAACGAATGCTTCCGTACATTTAAATCTAAGGCTCATTTACGCACTCACATCTCCTCGGTTCATGTGGCAGTTAAGGAAGTCAAATGTCTGCAATGTGAGAAAACATTCTTGAACGAGAAGAAGTTGAAGAATCACCTTTTCTATGCTCACCCTAAGCCAGAAGACAATGTTGTCTGCGAGATCTGCAATAAAGCGTACAAAAGCAACCTGAACTTAAAGATTCATATAAGGCAAGTTCATCCTTCAGCGAACCGGATGGCTGTTTGCCAGGTATGCAACAAAACCTTCAAAAGCGAAATGTTATTGCAAAGACACATCAAATGGAGTCACCCGGAAGATGGAATGACATACCGCTGCCCAGAATGTGGACGGACCTTACCATCTTTACAGTGCTATCAAAAGCACATTGCAAACGTCCATTTGAATTCCGCAACCCGCTGCGGTATTTGCGAAAAGACATTTAAAACACAAAAGAACCTAGAACGGCATGTGATGCATGTCCACGAGGGTCAAAAACCGCCACCAAAGAATTACAAACTTGGCAATTTCAAATGCTTGGAATGCGACAAGTTTTTTTCATCTCAAACTGCATTGGATTGGCATTTCGAGAGAATACATTTGGAGAACAGAAAACAGGAGAGCTTCTGCCAGATATGCGATAAAGAGCTGTCCGATTATCAGAGCCTGAAACGACACATGGAAACGGTTCATTCCGAAGAGGCAGCCACGTGCCCGGAATGCAATAAGACATTTAAATCCTTCATCAGTGTACAGAGACATATCAAAGTGACTCATGCAACATCTGATAAAACAGTAGTATGCGAAATGTGCCAAAAAACCTTCAAATGTTTAATGCATTTAAGAATTCACTGTCACGCGGTCCATCCAAAAAACCAGGGATTATTCACTTGTGACATTTGCCAGAAAATCTTCACTTCAAAGAAATACCTACAGAAACATCAAAGGACTCACATTACCGAGAAGAAATTCCAATGTGATATATGCTACAAATTCTATAGATGTATAACGgatgttaataaacataaaaagcGGTACCATGTCACAATCCTGCAAGCTGAGGACGCTGCAACAGTTACCGAGAGTATTTTACCAGACGTACATGGTGGTACAGAGATATTACCAGATGTAGAAAGTGACACAGAGATTTTACCACATGTAAAACAAGGTGGTACAGAGATTTTACCAGATGTAAAGGGAGATACAGAGATTTTACCAGATGCAAAAGGAGATACAGAGATTTTACCAGATGTAAAACGTGAAACAGAGATTTTACTAGATGTAAAAAGTGAAACAGAGATTTTACTAGATGTAAAAAGTGAAAGTAAGATTTAG
- Protein Sequence
- MEQNEMHIKNPIKLEIEFENNAPNYDHSIFNISGDIAQFPETNIQQSYPAIESVLLPQLNNLKHDQPNYDDIIQTSEDIQYLQEMVVQPYPEIPIEPATQLEPSYSISNDILPLKVEIKVEDGVIEHTQDPVQLFKEDLGPPLITKPCFTINDIQEKVYENGRKNRIKCPICGHDFKNRANLKNHLNFIHAKDDAMVECNECFRTFKSKAHLRTHISSVHVAVKEVKCLQCEKTFLNEKKLKNHLFYAHPKPEDNVVCEICNKAYKSNLNLKIHIRQVHPSANRMAVCQVCNKTFKSEMLLQRHIKWSHPEDGMTYRCPECGRTLPSLQCYQKHIANVHLNSATRCGICEKTFKTQKNLERHVMHVHEGQKPPPKNYKLGNFKCLECDKFFSSQTALDWHFERIHLENRKQESFCQICDKELSDYQSLKRHMETVHSEEAATCPECNKTFKSFISVQRHIKVTHATSDKTVVCEMCQKTFKCLMHLRIHCHAVHPKNQGLFTCDICQKIFTSKKYLQKHQRTHITEKKFQCDICYKFYRCITDVNKHKKRYHVTILQAEDAATVTESILPDVHGGTEILPDVESDTEILPHVKQGGTEILPDVKGDTEILPDAKGDTEILPDVKRETEILLDVKSETEILLDVKSESKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01337097;
- 90% Identity
- iTF_01337097;
- 80% Identity
- iTF_01337097;