Scos038117.1
Basic Information
- Insect
- Scrobipalpa costella
- Gene Symbol
- -
- Assembly
- GCA_949820665.1
- Location
- OX463322.1:7736230-7738602[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 4e-06 0.00044 21.8 4.0 1 23 10 33 10 33 0.95 2 21 0.0011 0.12 14.1 0.2 2 23 39 61 38 61 0.93 3 21 2.2e-05 0.0024 19.5 0.2 2 23 70 92 70 92 0.97 4 21 2.3e-06 0.00025 22.6 3.4 2 23 101 123 100 123 0.95 5 21 4e-05 0.0044 18.6 3.4 2 23 131 153 131 153 0.97 6 21 9.7e-07 0.00011 23.7 0.8 2 23 161 183 160 183 0.96 7 21 1.5e-07 1.7e-05 26.2 0.7 1 23 189 212 189 212 0.98 8 21 3.1 3.3e+02 3.3 0.3 1 23 220 243 220 243 0.86 9 21 5e-05 0.0055 18.3 1.9 1 23 265 288 265 288 0.96 10 21 0.00013 0.014 17.0 0.8 1 23 319 342 319 342 0.97 11 21 1.3 1.4e+02 4.5 0.2 2 21 350 369 349 370 0.90 12 21 0.059 6.4 8.7 4.2 1 23 378 401 378 401 0.94 13 21 7e-05 0.0075 17.9 2.6 1 23 424 447 424 447 0.97 14 21 1.1e-05 0.0011 20.5 0.5 2 23 454 476 453 476 0.96 15 21 3.7e-05 0.004 18.8 2.2 2 23 483 505 482 505 0.94 16 21 0.0086 0.94 11.3 2.2 1 23 511 534 511 534 0.97 17 21 1.8 2e+02 4.0 5.8 2 23 542 564 542 564 0.95 18 21 0.00021 0.023 16.4 0.1 1 23 571 594 571 594 0.98 19 21 0.0013 0.14 13.9 0.6 1 20 601 620 601 624 0.90 20 21 0.02 2.2 10.1 2.7 3 23 639 660 638 660 0.91 21 21 1.1 1.2e+02 4.6 0.2 2 23 681 703 680 703 0.93
Sequence Information
- Coding Sequence
- ATGTTTCATACACTGAACACATTGGATTTCGTGTGTGATTACTGCAGTCGCTCTTTTACAAGAAAATATAACTTGCAGACTCACATAGAAAATTGTCATATAAATTCGTCTTGTGCATGTGATGTTTGTGGACAGACATTTGGCAGCCCAGCAGGCTTGCAGCTCCACTACACTAGAGGTCACAACCAATTTGATGAACCATTGCCAGAGTGCGATGTCTGCGGTCGTATATTTAcgagaaaacaaaatattatgtcaCACATGATTACTGTCCATCTACAAGGCATGGGATCTGAGATCCGTTGTAGGATATGCACAAAAAAATTCACAACACAAAGAAATTTGAAAAGACACATGAAGCAATTACACAACCCAACCGTGGAGTATCCGACTTGCGACGAGTGCCACAAAGTTTTCAAAGGAAAACATTCTTTGATGACACACATACAAACAGCTCACGGCCCTGACAGAGGTTTGATAAAATGTGATCAGTGTGATAAAGTTTATACCAATAATAGAAACTTGAAAAGACATATTGAAATGAACCAtggagaaaaagaagaattcaGATGTGATATTTGCCCTAAAGTTTATACCTCTAACCAAAGTTTGAGACGGCATTTAAGAACAGCTCATAATACTGACAGCAATGATGAATACAAATGCGAATTTTGTGAGAAACTTATCCTTGGGAAAGAGAATCTTGATAGCCATATTCAGGTCTATCATAAACCAGAGAGTTCTTCGTCGAGTAGCTCAAATGACGCTGACTCTCCAGATGAAGATTTTGACTTTGAATGTGAGATATGTTCGCGTTGCTTTGAAAACGAGCAAAACTTGCGTCAACATGTAAAAAATGAACATTCTTTCAAAGCTTTCTACAAATACTGCAAGAATTTTCTGTTGAAACAGGTAGGTCATCAAGAACACAGTTCCAAAAGACAAAACTTGTTCTTCAATTGCGAGTTTTGCAATAACGTTTTTACCAACGTCTATGATTTGAAAGATcacatgaaaataaatcatGACAAGGAATATTGTCTCTCTTCATGTAATGTATGCTTCATCAAATTTtacagcaaggaagctatttcGGAACATAAAAAAATCTGCATTCCCCCACCAAATGCACACTCTTGCAGTCACTGTGATAAACTATTTACAGATATTTCCAGTCTCGAATTCCATACTAAAATTTTTCACCCTCAAGCTCAAATAGCTGATTCTAACATAAGTTCCACGAACGTGGATTACTCCCTCGAAGGAGCCTTCAAATGCCCTGATTGCGATCGCGTTTATTACAGCGACAGATCTCTCAAACATCATATAAAACTGAAACATACTACAGACGAGGCTGTGGAATGTGAATACTGCGGCAAAATTTGCAGCAATAAATACTATTTAGCTTCTCATATCAAAATTGTCCATTCTAGTGACACGTGGTCTAAGTGCGATTATTGCGATAAACAATTCAAATCTAAAAGAAACATTAGAAGACACATCGAATATACTCATCTGGGAATGCAGAGATACAAATGTATTGAATGTGAAACTTTGTTCAAAGAGAAAAGAAGTTTGCGAAAACACGTAAGAACTAAACACCCTGATTCTGCAATTTTCCCTCAATGCCATTTCTGTTATAAGCGGTTTGAGTCAGCTAAGTCTTGCAAGATCCATCTGAAATTACTACACTCTTTTAATATGAATACCTATCCATGTGATTGGTGTTCCGTATCATTCAGTTCAAAAGAAGCTCTAGACATCCACTTGCAAACGAAACATTTAGCTGAGGATGAAATTTACAAATGCGGGGAATGTAATCTCGTTTTCACTGGGCAAGACAAATTTGAGCGGCACAATGATCTCACGCATGTCAATGTTATGCCCAATATAAAACAGAAGTTACTGCCCAGgtgtattatttgtatgaaagacTTCAGTACAAGAAAGACTTTAAAAAGACACATTAAAAAGTTTCACGAGGGCTTTGATGTTGACGATCTTGCTACGTTCGGATCTCGAAGAAGAGTCTTTAATGTCGAATGCGAAGACTGTATTAAAAACTTCAACGATGACTACTATGTAAAAATACACGAAAAGCTGAAACATTCGAAAGAGGCTGTTATATTTAAATGCGAAACATGCAAGTCGTCTTATAACACCCTGGAATTTTCAATACAACGCTATAAAATGGTGAATGTAGACATGTGTAGAGGCAAGATGATCCTTAGCGAGTTATGTACTGCAGAAATGTCAGAAGATGAATCATACACTGGATTTGGGTCCTTACATGGCATGATGGAACCAGAAAGTACTACGAgcgatattcaaattaaaatagaacCAATAGTCGAATTGTCTGAAGAAGATTAA
- Protein Sequence
- MFHTLNTLDFVCDYCSRSFTRKYNLQTHIENCHINSSCACDVCGQTFGSPAGLQLHYTRGHNQFDEPLPECDVCGRIFTRKQNIMSHMITVHLQGMGSEIRCRICTKKFTTQRNLKRHMKQLHNPTVEYPTCDECHKVFKGKHSLMTHIQTAHGPDRGLIKCDQCDKVYTNNRNLKRHIEMNHGEKEEFRCDICPKVYTSNQSLRRHLRTAHNTDSNDEYKCEFCEKLILGKENLDSHIQVYHKPESSSSSSSNDADSPDEDFDFECEICSRCFENEQNLRQHVKNEHSFKAFYKYCKNFLLKQVGHQEHSSKRQNLFFNCEFCNNVFTNVYDLKDHMKINHDKEYCLSSCNVCFIKFYSKEAISEHKKICIPPPNAHSCSHCDKLFTDISSLEFHTKIFHPQAQIADSNISSTNVDYSLEGAFKCPDCDRVYYSDRSLKHHIKLKHTTDEAVECEYCGKICSNKYYLASHIKIVHSSDTWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPDSAIFPQCHFCYKRFESAKSCKIHLKLLHSFNMNTYPCDWCSVSFSSKEALDIHLQTKHLAEDEIYKCGECNLVFTGQDKFERHNDLTHVNVMPNIKQKLLPRCIICMKDFSTRKTLKRHIKKFHEGFDVDDLATFGSRRRVFNVECEDCIKNFNDDYYVKIHEKLKHSKEAVIFKCETCKSSYNTLEFSIQRYKMVNVDMCRGKMILSELCTAEMSEDESYTGFGSLHGMMEPESTTSDIQIKIEPIVELSEED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00178471;
- 90% Identity
- iTF_01337068;
- 80% Identity
- iTF_01337068;