Scos038041.1
Basic Information
- Insect
- Scrobipalpa costella
- Gene Symbol
- egg
- Assembly
- GCA_949820665.1
- Location
- OX463322.1:6675321-6718470[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.5 1.9e+04 -3.4 0.0 29 38 1869 1878 1843 1879 0.76 2 3 3e-13 1.6e-09 38.4 0.0 4 74 1910 1973 1907 1976 0.87 3 3 8e-08 0.00044 21.1 0.0 31 74 1996 2037 1989 2040 0.89
Sequence Information
- Coding Sequence
- ATGAATACCGAAGATGATAAGGAAGAGAACCGTCCCGAAACACAAAGTAAAATTGACCTCAACACTAAATTGGAGCCGTCAAAACCAAGCGTGGTTTCACCTTCGAAAGCCGCCAAGAATGGTAGTGGTGACCACTTGCCATCTCCATTCACATCTCTACTGACCAAAGAAACGACTACTGACAGCATATCCAAACCAACCTTTGAAGTAGGCGATGGGGATAAAGTCATAAATGTTGAAGTACAGCAAGATACGATAGATTCAGtagacataaataaacaaattgtttCTGAAGGTAATCAGGAAGAAGAAGCACTTGTGGTTCCACCCAAACCCACATTTCTAGAAAGTGTCAGTTCTGTAGTATCGGAAGATGTGGATAGTGAAAATCAGGATGAGGAACTGGTGCTGAAATGGGATGATGACGAAGATGATACAATTACACCCCTTAAAGATGATGAAATAGGTGGAAATCTTGATAAGAATGCAGAAAAATCTGAACTATTACAAAAGGAATCGAGAATGGCTAAAATAGATTTAGATCAAAATTTAGATACAGCTATtgaaactggagaaaaatcaTCCAAAATGACTGAAATAGACCTTGATCATGATTCTGAAAAATCTAAAGTTATATCTAAAGAATTTGATGACAATgctgaaataaataatgatgtCCAAAAGGAAGTTTCTGAGGATGATATGATTGAGGAACCAGAATTAAGAATGTCTGAAGATGAGGCTGAAGATGAGCAGGAAGATTTGCTCTCTGAAATTGATGCTCAAATTGCTGAGCTGGGGGCAAGTTTAGCCAAAGCAGAAAATGAAAATCTCATGAACATAGAAAATTCTGTTGAAGCAAAAACCATTGTAGGCAGTGTCACTGATAACTCAgaagaaaacattattacaaTAGATGAACTGGAAAAAGTAGCGGAAATTACTGATAGCAATTGCAGTAACCtgaaagaaacaaaagaaaataaggaTAAACAGAAAACAACTGAAATGGAGCTGGAGGAAGCTTTATTAGCAGATGATAAAACACCCCAAATGGTAGAAAATTCTAATATTAAACCTACCACTAAAGAAAGCAATATTACCGAAATCAAAATGAAAATTGATGCATCTGACAACTTAGAAAATGCTGATTTGATACCCAATCATAATGAAAAAGAAATCTCGCTAAATAATTCAGAAGTTCTTGCTAACAGTACACTGATTGGTAGTGATAATGAATTAGAGACATCCTGTAAAGATAATTCTTTTGAACATGATTCTTCTAGTTCTGTAGATGACAGGATTCATGGAGTCAATAAACCCAATGTAATGTTGGAAATTCCCACACAAGAACTTATAGATTTAGATGAATCTGCATTTTTAACACAAGATAATGACATGTCTGTAGatgaatataaaacaaaagattCAAATGTCTCTGTTGATTTGACAGACAATCAACATTCAAATGAGAAAATTAATACTGAAATAGAATCAGTTGCAAAAACTGTAAATTTACCATCTAACATTTCTGTTGATTTAACAGATGATAAAGATCAAGAAAATGAATTAATAGAAAAAATGGATACTGAAAAATCGTTTGATGATATGACGAGAGGCGCAGAAGGCGTTAATAAAGTTGCAATCATAAGAGAATCTATTGTATCCAATGATGATAAATCAAATCCTAAAGCTACTCAAGATGTTGAGAAACCAAGTGTGGATGTTATAAATAGTTCCTTATCTACAGATGATGTAAAAATGAAAACAATAGAAGAATCAGGTAAAAAAGTAGATCCTCCTGAGTCAACTAAAGAGGCGAATATTGACATAGTTGGTAAAAACACTGAAGAAAACCTTTCAATAGCTGTTGAAAGTACCGCAGTTGATGATGACAATACTGATATAGCCATCCAAACAGTGGGAGACTTAAAGACTGATAATAAACTAGCTATAGTTACTACAACAGAAACTGCCAAACCCACCATGGATGTTCAACCATCAACATCACAGGCAGGTCTTGGATCACTTGACCCGTCTGACGATGCAGCAGAGGTGGCCGAGGTGACGGACAGTCTCGGGCTGCTGGCAGAGTGTTCCCGAGTGAGAGAGGATGACGATGCAGACGGGGACGGTGATGTAGACGACCAGGAAACATCTGAccatgatgattatgatgaggACTTCGACCCTGATGACGAAAGCAGCAACCAGCTTACCGCCGAACATTCGGAGGACTCGGCGCAACATTCAGAGTCGGACATGCCCAAAGCACAGGACACTGATAAACAAACAACGGACACAGACAAACCATTTGGCATCATAGAGAACATGGCTACAGTAACTGAGACAGATGAAAAAGCTGAAGATGCAACTATAGCAGAAAATCAAATCATAGATCAAGAAATAGGAGTAACAGATCAAATAACAGAAGACGTAGATCAAATAACAGAAGACGTAGATCAAATAACAGAAGAAGTAGATCAAATAACAGAAGAAGTAGATCAAATAACAGAGCTGGATGAAGGTACAGCAGAAATAGATCAAGGTACATCAGAAGTAGATCAAATAACAGAAGAAGTAGACGCAGGGACGGTAGAAGGAGATCAAGAGACAGGAGGAAAGGAATTTGGTTTCGCGATCAGTAACGTCGTGAGTGAAGAGTCAACGGCCAAGGAGACAGAGACGGAGGTTGATATAGATGACGAGGTTGTTTGTGGGGAGGTGGAAGTAACAGACAACCTTCCTGAAAGCGACCAGCCACCCGAGGTGGACACATCAGCTCTCAAACACCTCTCCGATACAGATAAAGATATTCCCATTAAAGTGTGCACAGAGAGCAAACTGAGAGAGCTGTTACAGAAGGACGCAGAGGatactaagaagaagaagttggagATGGTTCAGCCGAGCCATGTCGTCAGCATAGTCGACCTGGAGAGCTCTTCCGAAGATGCAAAGGATACTATCATTATTAGCCCAGCAAAggacactaagaagaagaagttggagATTGTTCAGCCGAGCCATGTCGTCAATATAGTCGACCTGGAGAGCTCTTCCGAAGATGCAAAGGATACTATCATTATTAGCCCAGCAAAggacactaagaagaagaagttggagATTGTTCAGCCGAGCCATGTCGTCAGCATAGTCGACCTGGAGAGCTCTTCCGAAGATGCAAAGGATACTATCATTATTAGCCCAGCAAAGGAcagtaagaagaagaagttggagATGGTTCAGCCGAGCCATGTCGTCAGCATAGTCGACCTGGAGAGCTCTTCCGAAGATGCAAAGGATACTATCATTATTAGCCCAGCAAAggacactaagaagaagaagttggagATTGTTCAGCCGAGCCATGTCGTCAATATAGTTGAACTGGAGAGCTCTTCTGAAGATGCAAAGGACACTAATAAGAAGAAGTTGGAGATTGTTCAGGCGAGCCATGTCGTCAGCATAGTCGACCTGGAGAGCTCTTCCGAAGATGAGAGCGTCCAAAAGCCAGCGCCGGAGCATAAAGACAAAGAAGCCGTTACTTCCATCAACATATCGAAGGAGATAGAAGTGATGTCTTCAGGAGACAATACTTCGGAGATCATCAGCAAAGAGGGAGAGACTGTTATCCATGTGCCCAAGACTGCCGCTGCGCTGCACAAAATTAAATCCCGCCTGAACACAAGTGAAATTACCATAAAGACCGCCAGCCCGTCTGAGTCAACTACTCTCGTCATACCAGAGGCAAAGATGGGCGAATCACCGAAGCCTAAGTTCGGAGGATTGGAAGTGTTCAGTTTGGACTCTGACGAGGAAGATAACCCGCCAGCGTCGCCTTCACCCCCTCCCCCCGAGCCGGCAGCGGAGCCCGAGAAGCCTCCGAAAAAGTGCATCAACAGCGCGTGCACTAGCGACCAAAATGTACCCTTTTACCCTGCCGACCCCGGTACGGCCGCCTTCTACGACTGCCAGAAGAAGAAACGAGCTATGGTCTGCCAGACGTGCCTCTTCGAGAAGGCGCAAAGAGCATTGAAACTAGTGGAAGGCATCAAGAACTTCACTCCGATCCTGGCTTTGGAAGAGGTCCGCAGCGTGCAGGAGCTGGTCGAGATATCTGACTCCGACTCTGACGACGAGGGAGCCTCTGATGTTGAGTCTAGAGACAAGATCGGCTTCGACAACATACACATGCTGGGGCGGCAGCTGTCGGAGATCCTGAACGAGAGCTGGGCGCGCTACCAGCTGGACGCGCGCCTGCAGCACGCGCGCGACGAGCTGCATCACGAGGTGGACAAGCTGGAGAAGGAGAGCGCGGTGGTGAGCTCGCTGCTGGACGAGTGCCAGGCGGCCACGGACAAGCTGCGCGGCGAGCTGTACGCCACCTTCGAGGCCGAGCGCCACCAGCTGCCCGCCGTGCTCATACACGACACGCCCGACAAATTCgttAACGCCGCTAAGCGTCGTTTGTCGTCGGCGAGCGAGAGTCAAGCAAAGAAACCCGCCATTCAACCCGCCATACCACTCGCCGACACTGACAAGAGAGATGTAGCAATTAAGACtgagGTACCTAAACCGGAAACGGATCTGAAAGCAGCGGACATATCAAAACTTGATGACGACAAAGACATATCCGTGGTGAATCTATCAGCGGAGGCTGCGCCGGCGGACCTGCCCCCGCCCGGGGACACCGTCAGGGCTCCGCTGCAGGTCAACCAGACCATCTTCGCCATGAGACACGCCTTCGGCTCCTGGATCAAGGCTAGGGTGCTCGAAGTCACCCCTAAAGGATCTTTAGCAAATGCGCAGAACTTCACAATGTGCCGCGTCAAGTTTGAGAACAAGACTTCCAGAAACGCGTACAAGATCCTCCCGGCGCGCTGTCTCGCATACTATGAGCCGTCCAACGTCAGGATGACTATAGGTACCCGTATAATAGCGTTGTTCAAAGACACTAGCGCGGACAAGTCCGGTAAACGCGAGTCCTTCTACTCAGGCGTGGTGGCTGAGGTGCCAAATCCAGTCAATAAATACAGATACTTAGTATTCTTCGACGACGGCTACGCTCAATACGTGTCCCACGCCGACACGCGCCTGGTGTGCGAGTTCTCGGCGCTAGTGTGGGAGGAGGTACATCCCTTCTCCAGGGAGTTCGTCAAGGAGTACCTGATAGCCTACCCAGAGAGACCGATGGTCAGGCTTCATACTGGACAGAGCCTCAAGACAGAGTGGAACGGAAAATGGTGGCTATCCCGAGTGACGCAAGTAGACGGGTCTCTAGTACAAGTGTACTTCGAACAGGACAAACGCACAGAGTGGATCTACAGAGGGTCGACTAGACTGGCTCCGTTGTATCTTGAGCTGCAGGCCGCCGAGAAACACAGGGCTAGACCACTGCCTAGGAATAGGTTGCAGAATAAGTTGAACATGCCGTACGTGGAGTACACGCGGTTCGACGAGCAGTCCGACGTCAGCAAAACTAACGAGGCGCAGGTCAAGGCGCAGCAGGAGGAGATACGTCGTCAGCGCGCGGTAGCTAAGAAATCAACTACACTCGCTAATGTCCCTCCGCAACAAGCAGTCAGCGGGAACCTAGACGCAGTGACCAGTAGAGTGGTGTACTACACGCCAAAGAATGCTGTGAAGCCTTACAAGCTGACGTCTCACACGTGCAGTCCCAAGTGCAGACGCACTGACGTGTTGGCTCTCAAGGATCTGCGGACATACAACCCGCTGGCCAAGCCACTGCTTAGCGGCTGGGAGAGGCAAATAGTCCGGTACAAGGGTCACAAGGAGGCTATGTACGTTGCGCCGTGCGGCCGCCGGCTGCGCAACATGGCGGAGCTGCACCGCTATCTGCGAGTCATCGGCTCCGACATGGCCGTGGATCTGTTCCACTTCGGACCGCATACACACTGCTTAGCCGAGTTCGTGCTCAACAATATGTCGGTTGGTGGGTGTGTGTCccttgtgtgtgtatgtgtggcGGTGATGTACCTTGCGCCGTGCGGCCGCCGGCTGCGCAACATGGCGGAGCTGCACCGCTATCTGCGAGTCATCGGCTCCGACATGGCCGTGGATCTGTTCCACTTCGGACCGAATACACACTGCTTAGCCGAGTTCGTGCTCAACAAGTGTATTGTCGGGAAGAAGTATGTCGGTTGGTGGGTGTGTGTCccttgtgtgtgtatgtgtggcGGTGATGTACGTTGCGCCGTGCGGCCGCCGGCTGCGCAACATGGCGGAGCTGCACCGCTATCTGCGAGTCATCGGCTCCGACATGGCCGTGGATCTGTTCCACTTCGGACCGAATACACACTGCTTAGCCGAGTTCGTGCTCAACAAGTGTATTGTCGGGAAGAAGGTGAGCTCCGCTAA
- Protein Sequence
- MNTEDDKEENRPETQSKIDLNTKLEPSKPSVVSPSKAAKNGSGDHLPSPFTSLLTKETTTDSISKPTFEVGDGDKVINVEVQQDTIDSVDINKQIVSEGNQEEEALVVPPKPTFLESVSSVVSEDVDSENQDEELVLKWDDDEDDTITPLKDDEIGGNLDKNAEKSELLQKESRMAKIDLDQNLDTAIETGEKSSKMTEIDLDHDSEKSKVISKEFDDNAEINNDVQKEVSEDDMIEEPELRMSEDEAEDEQEDLLSEIDAQIAELGASLAKAENENLMNIENSVEAKTIVGSVTDNSEENIITIDELEKVAEITDSNCSNLKETKENKDKQKTTEMELEEALLADDKTPQMVENSNIKPTTKESNITEIKMKIDASDNLENADLIPNHNEKEISLNNSEVLANSTLIGSDNELETSCKDNSFEHDSSSSVDDRIHGVNKPNVMLEIPTQELIDLDESAFLTQDNDMSVDEYKTKDSNVSVDLTDNQHSNEKINTEIESVAKTVNLPSNISVDLTDDKDQENELIEKMDTEKSFDDMTRGAEGVNKVAIIRESIVSNDDKSNPKATQDVEKPSVDVINSSLSTDDVKMKTIEESGKKVDPPESTKEANIDIVGKNTEENLSIAVESTAVDDDNTDIAIQTVGDLKTDNKLAIVTTTETAKPTMDVQPSTSQAGLGSLDPSDDAAEVAEVTDSLGLLAECSRVREDDDADGDGDVDDQETSDHDDYDEDFDPDDESSNQLTAEHSEDSAQHSESDMPKAQDTDKQTTDTDKPFGIIENMATVTETDEKAEDATIAENQIIDQEIGVTDQITEDVDQITEDVDQITEEVDQITEEVDQITELDEGTAEIDQGTSEVDQITEEVDAGTVEGDQETGGKEFGFAISNVVSEESTAKETETEVDIDDEVVCGEVEVTDNLPESDQPPEVDTSALKHLSDTDKDIPIKVCTESKLRELLQKDAEDTKKKKLEMVQPSHVVSIVDLESSSEDAKDTIIISPAKDTKKKKLEIVQPSHVVNIVDLESSSEDAKDTIIISPAKDTKKKKLEIVQPSHVVSIVDLESSSEDAKDTIIISPAKDSKKKKLEMVQPSHVVSIVDLESSSEDAKDTIIISPAKDTKKKKLEIVQPSHVVNIVELESSSEDAKDTNKKKLEIVQASHVVSIVDLESSSEDESVQKPAPEHKDKEAVTSINISKEIEVMSSGDNTSEIISKEGETVIHVPKTAAALHKIKSRLNTSEITIKTASPSESTTLVIPEAKMGESPKPKFGGLEVFSLDSDEEDNPPASPSPPPPEPAAEPEKPPKKCINSACTSDQNVPFYPADPGTAAFYDCQKKKRAMVCQTCLFEKAQRALKLVEGIKNFTPILALEEVRSVQELVEISDSDSDDEGASDVESRDKIGFDNIHMLGRQLSEILNESWARYQLDARLQHARDELHHEVDKLEKESAVVSSLLDECQAATDKLRGELYATFEAERHQLPAVLIHDTPDKFVNAAKRRLSSASESQAKKPAIQPAIPLADTDKRDVAIKTEVPKPETDLKAADISKLDDDKDISVVNLSAEAAPADLPPPGDTVRAPLQVNQTIFAMRHAFGSWIKARVLEVTPKGSLANAQNFTMCRVKFENKTSRNAYKILPARCLAYYEPSNVRMTIGTRIIALFKDTSADKSGKRESFYSGVVAEVPNPVNKYRYLVFFDDGYAQYVSHADTRLVCEFSALVWEEVHPFSREFVKEYLIAYPERPMVRLHTGQSLKTEWNGKWWLSRVTQVDGSLVQVYFEQDKRTEWIYRGSTRLAPLYLELQAAEKHRARPLPRNRLQNKLNMPYVEYTRFDEQSDVSKTNEAQVKAQQEEIRRQRAVAKKSTTLANVPPQQAVSGNLDAVTSRVVYYTPKNAVKPYKLTSHTCSPKCRRTDVLALKDLRTYNPLAKPLLSGWERQIVRYKGHKEAMYVAPCGRRLRNMAELHRYLRVIGSDMAVDLFHFGPHTHCLAEFVLNNMSVGGCVSLVCVCVAVMYLAPCGRRLRNMAELHRYLRVIGSDMAVDLFHFGPNTHCLAEFVLNKCIVGKKYVGWWVCVPCVCMCGGDVRCAVRPPAAQHGGAAPLSASHRLRHGRGSVPLRTEYTLLSRVRAQQVYCREEGELR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -