Scos034656.1
Basic Information
- Insect
- Scrobipalpa costella
- Gene Symbol
- SNAPC4
- Assembly
- GCA_949820665.1
- Location
- OX463317.1:10374708-10377098[-]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1.7 2.9e+03 -0.3 0.0 22 35 226 240 222 248 0.81 2 5 8.1e-08 0.00014 23.2 0.2 3 45 259 303 257 304 0.93 3 5 4.5e-09 7.6e-06 27.2 0.1 2 44 311 357 310 359 0.93 4 5 2.2e-12 3.6e-09 37.8 0.0 1 43 363 405 363 407 0.97 5 5 2.4e-05 0.041 15.2 0.0 3 46 416 463 414 463 0.88
Sequence Information
- Coding Sequence
- ATGTCGGATTCTGAGTCTGAATATGATGACAACAGCTCCACTGATGAAGAAGCGGAACAGGAAGAGCTTAGAAAGCTCACAGCTGCTTTGGAACAGGACAATATCCAGAACCAAATATCCACTTATCAAGCTGCAAGTACTTCAACAAATGCTGAATATGCTAAAGTTACAGCTGCTATAGAGCTAAATAAAAAGATAGAggagaaaataattaaactagAAAAAGTTCTATATAATCGTTTACGAGAGTGCCGAAAACGGCTCGCtgatataaaagaaaaatctgTGAATACAAGACCTGAGAAAAATCAACAAGTATTCAGATATGTCTTCTGCGGAAAGCCGTATTTCAGAGACAGGGACAATTTTCTACCACCGGACAACGACGATACCATCACAATGCAGAGAGCAGGAATGTATGACTATTCAAACATTGCATGTTTAGTCGGTTGGACAGTTAAGGACAAAAAAGACCTCCgcacacaaatcctgaaacatTCTCGACAACTCAAAAAAGAAGAACTTGTATCAAAACTTAATTTGTTAATCAGACAATCTAGAACGCAGGACAGTGAAAGTTTACAGCAAGATATCATTGCACTTAGAAAACAAATAGGTTCTATTAATAAAACTGCACTAACTGAGAACCTAGTGCTACCAGTGGATGAAGAATACGACTGGGAGGCAATAGCTAATTCACTGAGCTATAGACATACACCACAAGAATATCGGGCTCTATGGAAACTATTTTTACATCCTACAATAAAACAGACGTCGTGGGAAAAAGGAGAACATTCAAGATTACGCATAATTGcaatgaaaaacaaattacaagATTGGGATAAAATTGCCAAGGAACTAAATACTGGACGCACCGGTTACCAATGTTTTGTATACTATCGTACTAATATGGGGAATAACACAATGGGCCAAAAATGGACACCAGAAGAGGAAGTGTACCTTAAAAGGTACATTAATTACTATAAGGATCACAATTACATACCATGGGGTAAAGTAGCTTCTTCAATGGAAAACAGaacaaaaattcaaatatataaCAAATATGCCAGGcttatggcaaataaaaaagGTAGATTCCTTCCTGAAGAAGATGCTGTGCTTCTAACAGGTGTTCAGAAATATGGGAGAAAGTTTAAACAGATTGCAAAATTTGTCTCTGGACGTTCCGGAGCTCAGTTACGCGCTCGGTATAATGTGCTGAATGCGTCCACAAGTAAATCAGTAGAGTGGACATTTGAAGAAGACAAAAAACTGATTCAACTCATGGCAAATCAGGATTTGTCTCTGTACATCAATTATGCAAATCTGACACCTCACTTTCCAGATAGAGACAGAAATCAATTACGAGCTAGATACGTAACTTTGCTAAAATGGATGAAGAAGCATCCAACTAGGGACATATCTAAAGCGCCGAGGAGAGAAGGACGACGTCTGGTGCACGGCATAGGAGAAGGTGACATGGACCTGGCAGTTGATAAATTAAGGGAAAGATTGTTTAACgatctcaaaataaaaaaaattaagaagatTACAAGAGATTCACCTGAAGATGTAATTGAACATGGCATTATTGCAGCCCTAATCACTGAATCAGTAAAGGCAGAAGACACAGATGACCTTAGTACTGAAAATGAACTCTCAGATAAAGACATGCAACTGCCTTTGAACGAACCTACGAATGAAACAAACATCcggaaattattaatattgcttaaagcaaaattaaataaacagacttTCGAGACAAGTTTATATGCTGTAAAGTATCCAAGATTGAAACAAGTAGAAGCCGAATCAATTCCAGTAAAAGTGAAATCATATTCAAGGAAAGCGGCCACAGATGTTATAACAGTTGGAGGACAAATTCTTCCACCAGACATTTGGGGCAACCATAAATTGACAACAAATGAATATGTGTTGCCGCCGAACTTCTCCACAATCACTGGTTTGCGGAGGCTGATGACATTTGCTAGCACGAAACCCCACAATAGCGATCAGTCATCAAGTTTACACCAATACACATATAGGAATATATTAGTAAGGGAGCAAGTTCATCTTTTTATGGAGAGATTCCAAACACTGTTCTTGTGGCCTATGTTATTGTCTAACGATCCACCAAAAGAAGAGGTTGACCGCCAACCTATTAAGATGCATATTGATAAATATGTAAGACAGAGAGAACATTTACGAATGCCTTCCTGCATGAGTGTGATAATACCGGATAAAGTTAACAAGCTTGTCAATGAGTACATTGATTTGCCAACTACAAGTACAGATACCACAGTGAAACCTAAAGTTGGTAATGATGATTTTATGTacattgatgatgatgaagaacaTCTATCAGAatttgaagatgatgatgattag
- Protein Sequence
- MSDSESEYDDNSSTDEEAEQEELRKLTAALEQDNIQNQISTYQAASTSTNAEYAKVTAAIELNKKIEEKIIKLEKVLYNRLRECRKRLADIKEKSVNTRPEKNQQVFRYVFCGKPYFRDRDNFLPPDNDDTITMQRAGMYDYSNIACLVGWTVKDKKDLRTQILKHSRQLKKEELVSKLNLLIRQSRTQDSESLQQDIIALRKQIGSINKTALTENLVLPVDEEYDWEAIANSLSYRHTPQEYRALWKLFLHPTIKQTSWEKGEHSRLRIIAMKNKLQDWDKIAKELNTGRTGYQCFVYYRTNMGNNTMGQKWTPEEEVYLKRYINYYKDHNYIPWGKVASSMENRTKIQIYNKYARLMANKKGRFLPEEDAVLLTGVQKYGRKFKQIAKFVSGRSGAQLRARYNVLNASTSKSVEWTFEEDKKLIQLMANQDLSLYINYANLTPHFPDRDRNQLRARYVTLLKWMKKHPTRDISKAPRREGRRLVHGIGEGDMDLAVDKLRERLFNDLKIKKIKKITRDSPEDVIEHGIIAALITESVKAEDTDDLSTENELSDKDMQLPLNEPTNETNIRKLLILLKAKLNKQTFETSLYAVKYPRLKQVEAESIPVKVKSYSRKAATDVITVGGQILPPDIWGNHKLTTNEYVLPPNFSTITGLRRLMTFASTKPHNSDQSSSLHQYTYRNILVREQVHLFMERFQTLFLWPMLLSNDPPKEEVDRQPIKMHIDKYVRQREHLRMPSCMSVIIPDKVNKLVNEYIDLPTTSTDTTVKPKVGNDDFMYIDDDEEHLSEFEDDDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01336787;
- 90% Identity
- -
- 80% Identity
- -