Scos026920.1
Basic Information
- Insect
- Scrobipalpa costella
- Gene Symbol
- -
- Assembly
- GCA_949820665.1
- Location
- OX463310.1:19996222-20003048[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.6e-11 3.6e-08 34.2 0.0 4 39 144 180 141 184 0.89 2 4 4.4e-13 4.4e-10 40.4 0.2 1 39 195 233 195 236 0.95 3 4 6.5e-14 6.5e-11 43.0 0.0 1 45 250 295 250 295 0.96 4 4 1e-17 1e-14 55.2 0.0 1 42 302 344 302 346 0.95
Sequence Information
- Coding Sequence
- atgcCTGGGCAAGGACTGATACAAATAAAATGCGAGCCcacgtcagaagaagaagacggcaACTCACAATTTGCTCATTCATTTTATAATAcacaggtGTCGGGTTTAGAAGAGTTAGCGCCGGCGGGCCCAACCGCCATCCCCGTCGCAGAGTGTGTCAAGCAGGAGCCAGTGCCATCTGCCGGCACCTTCGAGACCCTGGAGTCAGCTCCGCATGCTCATACGggTTCAACTCTGATCGACCGTCATTTAGCGATGCTGACCGCTAACGAACTTCCAGACTCTTCAGATTTTATGCCGCTTCTAAACGTAAAGGATGAACCGCTCTCCGAAGGAGAACAACACACACAAAGCGGTGACGAGACCAGTGACTCTTCAACGCAACCTGAACCAGCAGCTCGTGGCAGCCCGAAGAGCTGGACACAGAAGGACATGGATAACGCTCTAGAGGCGTTGCGGAGTCACAACATGAGTCTTACTAAGgcTTCAGCAACTTACGGCATTCCCTCCACAACTCTCTGGCAAAGGGCACATCGTCTCGGGATCGACACACCGAAGAAAGAAGGAGCAGCCAAATCCTGGACAGAAGATGACCTCAGGAGGGCACTGCATGCATTGAGGGCTGGCGCTATATCCGCTAACAAGGCTAGCAAGGCTTATGGTATACCAAGCAGTACACTTTACAAGATAGCTCGTCGCGAAGGCATCCGCCTGGCTGCGCCATTCAACGCGGCACCCACAGCCTGGACTCGCGCAGATCTGAACCGCGCGCTCGCCTCTATCCGCTGTGGGCACAACTCCGTGCAGCGCGCCGCCACGCAGTTCGGAATCCCGACCGgTACATTATATGGTCGATGTAAGCGAGAAGGTATCGAGTTGTCTCGATCGAACCCTACGCCGTGGTCGGAAGATGCTATGGGAGAAGCGTTGGAAGCTGTTAGAGTGGGACAAATGTCAATCAATCAAGCTGCGATCCACTTCAACCTGCCTTATTCCTCATTGTACGGCAGGTTCAAGAGGTGCAAATACCAAATTCAGGGTATGCCGAACCAACAGGACCTCCAAAATCCTCCGGAAATAGAGTCTCAACAGACAGACATGTATTATCAACAGCCGTCCCATTCCGTCCAACACAACTCAGATGAACAACACTACCACCACATGTACACAGACCACGATCCAACGATACACGTGAATATGCCACAGGGACAGATGTACAATCATAACCAGCAAGCTATGTATTACCAGTGCAATAGCATCGTCAGTTGA
- Protein Sequence
- MPGQGLIQIKCEPTSEEEDGNSQFAHSFYNTQVSGLEELAPAGPTAIPVAECVKQEPVPSAGTFETLESAPHAHTGSTLIDRHLAMLTANELPDSSDFMPLLNVKDEPLSEGEQHTQSGDETSDSSTQPEPAARGSPKSWTQKDMDNALEALRSHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWTEDDLRRALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWTRADLNRALASIRCGHNSVQRAATQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYQIQGMPNQQDLQNPPEIESQQTDMYYQQPSHSVQHNSDEQHYHHMYTDHDPTIHVNMPQGQMYNHNQQAMYYQCNSIVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00720139;
- 90% Identity
- iTF_01501024;
- 80% Identity
- -