Scos007001.2
Basic Information
- Insect
- Scrobipalpa costella
- Gene Symbol
- e2f7
- Assembly
- GCA_949820665.1
- Location
- OX463297.1:16847583-16853609[+]
Transcription Factor Domain
- TF Family
- E2F
- Domain
- E2F_TDP domain
- PFAM
- PF02319
- TF Group
- Helix-turn-helix
- Description
- This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.036 3.9e+02 2.1 0.0 1 15 53 67 53 80 0.89 2 4 4e-17 4.4e-13 50.0 0.0 11 65 103 159 102 159 0.88 3 4 1.8 2e+04 -3.4 0.0 11 29 165 182 164 183 0.70 4 4 3.1e-17 3.4e-13 50.4 0.2 1 58 194 278 194 285 0.90
Sequence Information
- Coding Sequence
- ATGTATGAAGATGATAACATTTCGTCGACTCCTAAGCGTTGTGCGCTGTCTGAAGTTACAAATGCCAAGAATTATGTGTCCCCGACCGCTAACCTCAAACTCTTGACGAATGTCGCGCTACATTACCCCACGCCGCCGCCGAGTGCTGCGCACCGCAAGGAGAAGTCTCTTCAGATTCTATGTGACCGGTATGTTAACTTGCCACCACTATATTGGGTTAGTAGGGTCAACCAGGGACAAATCAGGATGTCTTTTCATGAAATGCAAATACCAGTCGTCACCTGGTTTATTGTCTTTGAACGAGTTCGATTTCTCAACTTATACCCACTTCACGGAAATGGCCCAGTGGAGATTCAGTTGGATAGCACGGCAGCCCGGCTAGGCGTAGAGAAACGCCGCATGTACGACATTATTAACATTCTGGAGGCCATGCAGTGCGCTGTGCACAAACGGAAAAACACATACCTGTGGCATGGAGGTGCCAGACTCAATTCCTTCTTAAAAATGCTGAAAGAACAAGGAGAAAATCTAAGGTTGTCAGAAGCACTGAGAGGCAAAGCTCCTAAACCACCTGCTCCAAAACATAAAACTCTTGGAGTCTTGGCTCAAAGATTCTTGATGCTATTTTTAGTGGAAAAACcaaaTACACTCATAAACCTGGAGATGGCAGTGGGTGTGCTCATAGACACCGCAAGCAAGAATAGAACCCAACTGTCCCCAGAGCAGCAAGATCGCCAGCACAAGTCCAAGGTACGGCGACTGTACGACATCGCTAATGTTTTGATCTCCATCGGCCTCATAGAAAAAGTATCAGGAAACCTAATTTTGAAAAAGCCAGTGTTTCGATATGTGAGGCCTATGAAACCTAAGAAGGCTGATAAAGTAGTTTCGAGTACGCCAACACCGTTAATGACTCCTTTATCGGTGGTTGAGAGTGAACCGCGTACGATGCCTTGCCAGGTGTTTGCCGGGAGGTCTAAGAGGAAGCTGGAGTTCACCACACCAAGCTCTAGCAAGGATCTCGGTGTGACTACTCCCCCGCACACTCCCTCACACAAGTGGGATGAAATCCTATTTGTTGCTGACATGGAACTGACTAGAATTAACAGTAGCACATAG
- Protein Sequence
- MYEDDNISSTPKRCALSEVTNAKNYVSPTANLKLLTNVALHYPTPPPSAAHRKEKSLQILCDRYVNLPPLYWVSRVNQGQIRMSFHEMQIPVVTWFIVFERVRFLNLYPLHGNGPVEIQLDSTAARLGVEKRRMYDIINILEAMQCAVHKRKNTYLWHGGARLNSFLKMLKEQGENLRLSEALRGKAPKPPAPKHKTLGVLAQRFLMLFLVEKPNTLINLEMAVGVLIDTASKNRTQLSPEQQDRQHKSKVRRLYDIANVLISIGLIEKVSGNLILKKPVFRYVRPMKPKKADKVVSSTPTPLMTPLSVVESEPRTMPCQVFAGRSKRKLEFTTPSSSKDLGVTTPPHTPSHKWDEILFVADMELTRINSST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -